Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0639 and Ga0059261_0640 are separated by 180 nucleotides Ga0059261_0640 and Ga0059261_0641 are separated by 11 nucleotides Ga0059261_0641 and Ga0059261_0642 are separated by 17 nucleotides Ga0059261_0642 and Ga0059261_0643 are separated by 108 nucleotides
Ga0059261_0639: Ga0059261_0639 - Protein-L-isoaspartate carboxylmethyltransferase, at 681,502 to 682,161
_0639
Ga0059261_0640: Ga0059261_0640 - tRNA, at 682,342 to 682,415
_0640
Ga0059261_0641: Ga0059261_0641 - hypothetical protein, at 682,427 to 682,687
_0641
Ga0059261_0642: Ga0059261_0642 - Protein of unknown function (DUF3011), at 682,705 to 683,592
_0642
Ga0059261_0643: Ga0059261_0643 - Uncharacterized protein conserved in bacteria, at 683,701 to 685,092
_0643
Position (kb) 682
683
684 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 682.204 kb on + strand at 682.230 kb on - strand at 682.230 kb on - strand at 682.248 kb on - strand at 682.754 kb on + strand at 682.754 kb on + strand at 682.754 kb on + strand at 682.754 kb on + strand at 682.754 kb on + strand at 682.754 kb on + strand at 682.754 kb on + strand at 682.755 kb on - strand at 682.755 kb on - strand at 682.755 kb on - strand at 682.755 kb on - strand at 682.785 kb on - strand at 682.985 kb on + strand, within Ga0059261_0642 at 682.985 kb on + strand, within Ga0059261_0642 at 682.986 kb on - strand, within Ga0059261_0642 at 682.986 kb on - strand, within Ga0059261_0642 at 682.986 kb on - strand, within Ga0059261_0642 at 682.986 kb on - strand, within Ga0059261_0642 at 683.150 kb on + strand, within Ga0059261_0642 at 683.151 kb on - strand, within Ga0059261_0642 at 683.151 kb on - strand, within Ga0059261_0642 at 683.156 kb on + strand, within Ga0059261_0642 at 683.204 kb on + strand at 683.204 kb on + strand, within Ga0059261_0642 at 683.205 kb on - strand, within Ga0059261_0642 at 683.205 kb on - strand, within Ga0059261_0642 at 683.205 kb on - strand, within Ga0059261_0642 at 683.286 kb on - strand, within Ga0059261_0642 at 683.366 kb on + strand, within Ga0059261_0642 at 683.644 kb on + strand at 683.644 kb on + strand at 683.644 kb on + strand at 683.645 kb on - strand at 683.645 kb on - strand at 683.645 kb on - strand at 683.645 kb on - strand at 683.645 kb on - strand at 683.645 kb on - strand at 683.646 kb on + strand at 683.646 kb on + strand at 683.647 kb on - strand at 683.647 kb on - strand at 683.647 kb on - strand at 683.836 kb on + strand at 683.837 kb on - strand at 683.837 kb on - strand at 683.837 kb on - strand at 683.871 kb on + strand, within Ga0059261_0643 at 683.872 kb on - strand, within Ga0059261_0643 at 683.872 kb on - strand, within Ga0059261_0643 at 683.949 kb on - strand, within Ga0059261_0643 at 683.949 kb on - strand, within Ga0059261_0643 at 684.155 kb on + strand, within Ga0059261_0643 at 684.155 kb on + strand at 684.155 kb on + strand, within Ga0059261_0643 at 684.155 kb on + strand, within Ga0059261_0643 at 684.155 kb on + strand, within Ga0059261_0643 at 684.155 kb on + strand, within Ga0059261_0643 at 684.155 kb on + strand, within Ga0059261_0643 at 684.156 kb on - strand, within Ga0059261_0643 at 684.156 kb on - strand, within Ga0059261_0643 at 684.156 kb on - strand, within Ga0059261_0643 at 684.185 kb on + strand, within Ga0059261_0643 at 684.185 kb on + strand, within Ga0059261_0643 at 684.185 kb on + strand, within Ga0059261_0643 at 684.185 kb on + strand, within Ga0059261_0643 at 684.185 kb on + strand, within Ga0059261_0643 at 684.186 kb on - strand, within Ga0059261_0643 at 684.291 kb on - strand, within Ga0059261_0643 at 684.291 kb on - strand, within Ga0059261_0643 at 684.570 kb on + strand, within Ga0059261_0643 at 684.570 kb on + strand at 684.571 kb on - strand, within Ga0059261_0643
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 682,204 + -1.7 682,230 - +0.7 682,230 - -0.5 682,248 - -0.5 682,754 + -0.7 682,754 + +0.6 682,754 + +0.3 682,754 + +0.2 682,754 + +0.5 682,754 + -0.3 682,754 + +0.6 682,755 - -0.0 682,755 - +1.1 682,755 - -0.2 682,755 - -0.7 682,785 - +0.1 682,985 + Ga0059261_0642 0.32 -0.0 682,985 + Ga0059261_0642 0.32 +0.6 682,986 - Ga0059261_0642 0.32 -0.4 682,986 - Ga0059261_0642 0.32 -0.3 682,986 - Ga0059261_0642 0.32 -0.7 682,986 - Ga0059261_0642 0.32 -0.2 683,150 + Ga0059261_0642 0.50 +0.1 683,151 - Ga0059261_0642 0.50 +0.2 683,151 - Ga0059261_0642 0.50 +0.0 683,156 + Ga0059261_0642 0.51 +0.1 683,204 + +0.3 683,204 + Ga0059261_0642 0.56 +0.3 683,205 - Ga0059261_0642 0.56 -0.0 683,205 - Ga0059261_0642 0.56 +0.1 683,205 - Ga0059261_0642 0.56 -0.1 683,286 - Ga0059261_0642 0.65 -0.7 683,366 + Ga0059261_0642 0.74 -0.8 683,644 + -0.1 683,644 + +0.1 683,644 + -0.4 683,645 - -0.0 683,645 - -1.1 683,645 - -0.7 683,645 - -0.2 683,645 - +0.0 683,645 - +0.5 683,646 + +0.3 683,646 + -0.6 683,647 - -0.4 683,647 - -3.2 683,647 - +0.1 683,836 + +0.3 683,837 - -0.3 683,837 - -0.1 683,837 - -0.3 683,871 + Ga0059261_0643 0.12 -0.4 683,872 - Ga0059261_0643 0.12 -0.9 683,872 - Ga0059261_0643 0.12 +0.3 683,949 - Ga0059261_0643 0.18 +0.3 683,949 - Ga0059261_0643 0.18 -0.7 684,155 + Ga0059261_0643 0.33 +0.2 684,155 + -1.4 684,155 + Ga0059261_0643 0.33 -0.3 684,155 + Ga0059261_0643 0.33 -0.5 684,155 + Ga0059261_0643 0.33 -0.9 684,155 + Ga0059261_0643 0.33 +0.1 684,155 + Ga0059261_0643 0.33 -0.4 684,156 - Ga0059261_0643 0.33 -0.3 684,156 - Ga0059261_0643 0.33 -0.4 684,156 - Ga0059261_0643 0.33 +0.9 684,185 + Ga0059261_0643 0.35 -0.5 684,185 + Ga0059261_0643 0.35 -0.8 684,185 + Ga0059261_0643 0.35 +0.2 684,185 + Ga0059261_0643 0.35 +0.6 684,185 + Ga0059261_0643 0.35 +0.0 684,186 - Ga0059261_0643 0.35 +0.4 684,291 - Ga0059261_0643 0.42 +0.4 684,291 - Ga0059261_0643 0.42 +0.1 684,570 + Ga0059261_0643 0.62 +0.1 684,570 + +0.9 684,571 - Ga0059261_0643 0.62 -0.1
Or see this region's nucleotide sequence