Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0638

Experiment: Rifampicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0636 and Ga0059261_0637 are separated by 36 nucleotidesGa0059261_0637 and Ga0059261_0638 are separated by 81 nucleotidesGa0059261_0638 and Ga0059261_0639 are separated by 13 nucleotidesGa0059261_0639 and Ga0059261_0640 are separated by 180 nucleotidesGa0059261_0640 and Ga0059261_0641 are separated by 11 nucleotides Ga0059261_0636: Ga0059261_0636 - valyl-tRNA synthetase (EC 6.1.1.9), at 676,599 to 679,388 _0636 Ga0059261_0637: Ga0059261_0637 - Protein of unknown function (DUF2497), at 679,425 to 679,886 _0637 Ga0059261_0638: Ga0059261_0638 - type I secretion outer membrane protein, TolC family, at 679,968 to 681,488 _0638 Ga0059261_0639: Ga0059261_0639 - Protein-L-isoaspartate carboxylmethyltransferase, at 681,502 to 682,161 _0639 Ga0059261_0640: Ga0059261_0640 - tRNA, at 682,342 to 682,415 _0640 Ga0059261_0641: Ga0059261_0641 - hypothetical protein, at 682,427 to 682,687 _0641 Position (kb) 679 680 681 682Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 679.872 kb on - strandat 679.902 kb on + strandat 679.962 kb on + strandat 679.969 kb on + strandat 679.969 kb on + strandat 679.969 kb on + strandat 679.970 kb on - strandat 679.970 kb on - strandat 679.972 kb on + strandat 679.972 kb on + strandat 679.973 kb on - strandat 679.973 kb on - strandat 679.973 kb on - strandat 679.973 kb on - strandat 680.101 kb on + strandat 680.101 kb on + strandat 680.102 kb on - strandat 680.102 kb on - strandat 680.120 kb on - strand, within Ga0059261_0638at 680.197 kb on + strand, within Ga0059261_0638at 680.197 kb on + strand, within Ga0059261_0638at 680.198 kb on - strand, within Ga0059261_0638at 680.198 kb on - strand, within Ga0059261_0638at 680.198 kb on - strand, within Ga0059261_0638at 680.198 kb on - strand, within Ga0059261_0638at 680.264 kb on + strandat 680.313 kb on + strand, within Ga0059261_0638at 680.313 kb on + strand, within Ga0059261_0638at 680.313 kb on + strand, within Ga0059261_0638at 680.313 kb on + strand, within Ga0059261_0638at 680.313 kb on + strand, within Ga0059261_0638at 680.314 kb on - strand, within Ga0059261_0638at 680.386 kb on + strand, within Ga0059261_0638at 680.386 kb on + strand, within Ga0059261_0638at 680.386 kb on + strand, within Ga0059261_0638at 680.386 kb on + strand, within Ga0059261_0638at 680.387 kb on - strand, within Ga0059261_0638at 680.387 kb on - strand, within Ga0059261_0638at 680.599 kb on + strand, within Ga0059261_0638at 680.599 kb on + strand, within Ga0059261_0638at 680.599 kb on + strand, within Ga0059261_0638at 680.599 kb on + strand, within Ga0059261_0638at 680.599 kb on + strand, within Ga0059261_0638at 680.600 kb on - strand, within Ga0059261_0638at 680.600 kb on - strand, within Ga0059261_0638at 680.600 kb on - strand, within Ga0059261_0638at 680.600 kb on - strand, within Ga0059261_0638at 680.600 kb on - strand, within Ga0059261_0638at 680.602 kb on + strand, within Ga0059261_0638at 680.602 kb on + strand, within Ga0059261_0638at 680.602 kb on + strand, within Ga0059261_0638at 680.602 kb on + strand, within Ga0059261_0638at 680.603 kb on - strand, within Ga0059261_0638at 680.665 kb on + strand, within Ga0059261_0638at 680.666 kb on - strand, within Ga0059261_0638at 680.666 kb on - strand, within Ga0059261_0638at 680.666 kb on - strand, within Ga0059261_0638at 680.712 kb on - strand, within Ga0059261_0638at 680.712 kb on - strand, within Ga0059261_0638at 680.815 kb on + strand, within Ga0059261_0638at 680.815 kb on + strand, within Ga0059261_0638at 680.816 kb on - strand, within Ga0059261_0638at 680.816 kb on - strandat 680.816 kb on - strand, within Ga0059261_0638at 680.816 kb on - strand, within Ga0059261_0638at 680.816 kb on - strand, within Ga0059261_0638at 680.816 kb on - strand, within Ga0059261_0638at 680.816 kb on - strand, within Ga0059261_0638at 681.022 kb on + strand, within Ga0059261_0638at 681.223 kb on + strand, within Ga0059261_0638at 681.224 kb on - strand, within Ga0059261_0638at 681.224 kb on - strand, within Ga0059261_0638at 681.329 kb on + strand, within Ga0059261_0638at 681.329 kb on + strand, within Ga0059261_0638at 681.330 kb on - strand, within Ga0059261_0638at 681.330 kb on - strand, within Ga0059261_0638at 681.330 kb on - strand, within Ga0059261_0638at 681.330 kb on - strand, within Ga0059261_0638at 681.330 kb on - strand, within Ga0059261_0638at 681.330 kb on - strand, within Ga0059261_0638at 681.332 kb on + strand, within Ga0059261_0638at 681.332 kb on + strand, within Ga0059261_0638at 681.332 kb on + strand, within Ga0059261_0638at 681.332 kb on + strand, within Ga0059261_0638at 681.332 kb on + strand, within Ga0059261_0638at 681.332 kb on + strand, within Ga0059261_0638at 681.332 kb on + strand, within Ga0059261_0638at 681.332 kb on + strand, within Ga0059261_0638at 681.333 kb on - strand, within Ga0059261_0638at 681.333 kb on - strand, within Ga0059261_0638at 681.333 kb on - strand, within Ga0059261_0638at 681.333 kb on - strandat 681.333 kb on - strand, within Ga0059261_0638at 681.333 kb on - strand, within Ga0059261_0638at 681.333 kb on - strand, within Ga0059261_0638at 681.333 kb on - strand, within Ga0059261_0638at 681.333 kb on - strand, within Ga0059261_0638at 681.333 kb on - strand, within Ga0059261_0638at 681.333 kb on - strand, within Ga0059261_0638at 681.333 kb on - strandat 681.333 kb on - strandat 681.333 kb on - strand, within Ga0059261_0638at 681.333 kb on - strand, within Ga0059261_0638at 681.333 kb on - strand, within Ga0059261_0638at 681.334 kb on + strand, within Ga0059261_0638at 681.334 kb on + strand, within Ga0059261_0638at 681.334 kb on + strand, within Ga0059261_0638at 681.334 kb on + strand, within Ga0059261_0638at 681.334 kb on + strand, within Ga0059261_0638at 681.335 kb on - strand, within Ga0059261_0638at 681.335 kb on - strand, within Ga0059261_0638at 681.335 kb on - strand, within Ga0059261_0638at 681.335 kb on - strand, within Ga0059261_0638at 681.335 kb on - strandat 681.335 kb on - strand, within Ga0059261_0638at 681.335 kb on - strand, within Ga0059261_0638at 681.335 kb on - strand, within Ga0059261_0638at 681.335 kb on - strand, within Ga0059261_0638at 681.335 kb on - strand, within Ga0059261_0638at 681.335 kb on - strand, within Ga0059261_0638at 681.335 kb on - strandat 681.335 kb on - strand, within Ga0059261_0638at 681.335 kb on - strand, within Ga0059261_0638at 682.204 kb on + strandat 682.230 kb on - strandat 682.230 kb on - strandat 682.248 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml
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679,872 - +0.1
679,902 + -1.0
679,962 + +0.1
679,969 + +0.1
679,969 + -0.6
679,969 + -0.2
679,970 - -0.4
679,970 - -0.1
679,972 + +0.9
679,972 + -0.8
679,973 - +0.3
679,973 - +0.0
679,973 - +0.3
679,973 - +0.2
680,101 + -0.1
680,101 + +0.5
680,102 - +0.4
680,102 - +0.2
680,120 - Ga0059261_0638 0.10 -1.1
680,197 + Ga0059261_0638 0.15 -2.7
680,197 + Ga0059261_0638 0.15 -3.7
680,198 - Ga0059261_0638 0.15 -2.4
680,198 - Ga0059261_0638 0.15 -2.2
680,198 - Ga0059261_0638 0.15 -3.1
680,198 - Ga0059261_0638 0.15 -4.0
680,264 + -0.1
680,313 + Ga0059261_0638 0.23 -4.9
680,313 + Ga0059261_0638 0.23 -2.2
680,313 + Ga0059261_0638 0.23 -3.6
680,313 + Ga0059261_0638 0.23 -3.1
680,313 + Ga0059261_0638 0.23 -2.5
680,314 - Ga0059261_0638 0.23 -4.6
680,386 + Ga0059261_0638 0.27 -2.4
680,386 + Ga0059261_0638 0.27 -3.9
680,386 + Ga0059261_0638 0.27 -4.5
680,386 + Ga0059261_0638 0.27 -3.5
680,387 - Ga0059261_0638 0.28 -3.9
680,387 - Ga0059261_0638 0.28 -3.6
680,599 + Ga0059261_0638 0.41 -2.1
680,599 + Ga0059261_0638 0.41 -3.8
680,599 + Ga0059261_0638 0.41 -4.6
680,599 + Ga0059261_0638 0.41 -1.7
680,599 + Ga0059261_0638 0.41 -2.7
680,600 - Ga0059261_0638 0.42 -1.4
680,600 - Ga0059261_0638 0.42 -4.7
680,600 - Ga0059261_0638 0.42 -4.6
680,600 - Ga0059261_0638 0.42 -3.5
680,600 - Ga0059261_0638 0.42 -3.8
680,602 + Ga0059261_0638 0.42 -3.4
680,602 + Ga0059261_0638 0.42 -2.8
680,602 + Ga0059261_0638 0.42 -0.4
680,602 + Ga0059261_0638 0.42 -3.6
680,603 - Ga0059261_0638 0.42 -4.9
680,665 + Ga0059261_0638 0.46 -2.0
680,666 - Ga0059261_0638 0.46 -3.7
680,666 - Ga0059261_0638 0.46 -2.2
680,666 - Ga0059261_0638 0.46 -3.1
680,712 - Ga0059261_0638 0.49 -2.8
680,712 - Ga0059261_0638 0.49 -3.0
680,815 + Ga0059261_0638 0.56 -2.2
680,815 + Ga0059261_0638 0.56 -2.5
680,816 - Ga0059261_0638 0.56 -4.0
680,816 - -0.1
680,816 - Ga0059261_0638 0.56 -2.3
680,816 - Ga0059261_0638 0.56 -4.8
680,816 - Ga0059261_0638 0.56 -3.2
680,816 - Ga0059261_0638 0.56 -2.8
680,816 - Ga0059261_0638 0.56 -2.7
681,022 + Ga0059261_0638 0.69 -3.1
681,223 + Ga0059261_0638 0.83 -4.5
681,224 - Ga0059261_0638 0.83 -3.4
681,224 - Ga0059261_0638 0.83 -3.1
681,329 + Ga0059261_0638 0.89 -2.4
681,329 + Ga0059261_0638 0.89 -4.3
681,330 - Ga0059261_0638 0.90 -2.9
681,330 - Ga0059261_0638 0.90 -2.4
681,330 - Ga0059261_0638 0.90 -4.9
681,330 - Ga0059261_0638 0.90 -1.4
681,330 - Ga0059261_0638 0.90 -2.9
681,330 - Ga0059261_0638 0.90 -2.6
681,332 + Ga0059261_0638 0.90 -3.4
681,332 + Ga0059261_0638 0.90 -2.9
681,332 + Ga0059261_0638 0.90 -2.3
681,332 + Ga0059261_0638 0.90 -1.7
681,332 + Ga0059261_0638 0.90 -3.5
681,332 + Ga0059261_0638 0.90 -2.1
681,332 + Ga0059261_0638 0.90 -2.7
681,332 + Ga0059261_0638 0.90 -3.3
681,333 - Ga0059261_0638 0.90 -2.2
681,333 - Ga0059261_0638 0.90 -4.3
681,333 - Ga0059261_0638 0.90 -3.4
681,333 - -0.1
681,333 - Ga0059261_0638 0.90 +0.9
681,333 - Ga0059261_0638 0.90 -4.5
681,333 - Ga0059261_0638 0.90 -3.3
681,333 - Ga0059261_0638 0.90 -3.1
681,333 - Ga0059261_0638 0.90 -4.0
681,333 - Ga0059261_0638 0.90 +0.2
681,333 - Ga0059261_0638 0.90 -3.9
681,333 - -1.4
681,333 - +0.9
681,333 - Ga0059261_0638 0.90 -4.9
681,333 - Ga0059261_0638 0.90 -2.8
681,333 - Ga0059261_0638 0.90 -0.7
681,334 + Ga0059261_0638 0.90 -3.0
681,334 + Ga0059261_0638 0.90 -3.3
681,334 + Ga0059261_0638 0.90 -1.7
681,334 + Ga0059261_0638 0.90 -2.8
681,334 + Ga0059261_0638 0.90 -4.5
681,335 - Ga0059261_0638 0.90 -1.7
681,335 - Ga0059261_0638 0.90 -4.5
681,335 - Ga0059261_0638 0.90 -3.3
681,335 - Ga0059261_0638 0.90 -3.2
681,335 - -0.1
681,335 - Ga0059261_0638 0.90 -3.5
681,335 - Ga0059261_0638 0.90 -1.4
681,335 - Ga0059261_0638 0.90 -4.4
681,335 - Ga0059261_0638 0.90 -2.5
681,335 - Ga0059261_0638 0.90 -5.3
681,335 - Ga0059261_0638 0.90 -2.1
681,335 - -0.7
681,335 - Ga0059261_0638 0.90 -3.9
681,335 - Ga0059261_0638 0.90 -3.5
682,204 + -1.7
682,230 - +0.7
682,230 - -0.5
682,248 - -0.5

Or see this region's nucleotide sequence