Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0635 and Ga0059261_0636 are separated by 425 nucleotides Ga0059261_0636 and Ga0059261_0637 are separated by 36 nucleotides Ga0059261_0637 and Ga0059261_0638 are separated by 81 nucleotides
Ga0059261_0635: Ga0059261_0635 - choice-of-anchor A domain, at 675,109 to 676,173
_0635
Ga0059261_0636: Ga0059261_0636 - valyl-tRNA synthetase (EC 6.1.1.9), at 676,599 to 679,388
_0636
Ga0059261_0637: Ga0059261_0637 - Protein of unknown function (DUF2497), at 679,425 to 679,886
_0637
Ga0059261_0638: Ga0059261_0638 - type I secretion outer membrane protein, TolC family, at 679,968 to 681,488
_0638
Position (kb) 676
677
678
679
680 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 675.986 kb on + strand, within Ga0059261_0635 at 675.986 kb on + strand, within Ga0059261_0635 at 675.986 kb on + strand, within Ga0059261_0635 at 675.986 kb on + strand, within Ga0059261_0635 at 675.986 kb on + strand, within Ga0059261_0635 at 675.987 kb on - strand, within Ga0059261_0635 at 675.987 kb on - strand, within Ga0059261_0635 at 676.026 kb on + strand, within Ga0059261_0635 at 676.026 kb on + strand, within Ga0059261_0635 at 676.026 kb on + strand, within Ga0059261_0635 at 676.026 kb on + strand, within Ga0059261_0635 at 676.026 kb on + strand, within Ga0059261_0635 at 676.027 kb on - strand, within Ga0059261_0635 at 676.167 kb on + strand at 676.167 kb on + strand at 676.168 kb on - strand at 676.168 kb on - strand at 676.168 kb on - strand at 676.168 kb on - strand at 676.168 kb on - strand at 676.168 kb on - strand at 676.168 kb on - strand at 676.173 kb on + strand at 676.173 kb on + strand at 676.173 kb on + strand at 676.173 kb on + strand at 676.173 kb on + strand at 676.173 kb on + strand at 676.174 kb on - strand at 676.174 kb on - strand at 676.174 kb on - strand at 676.174 kb on - strand at 676.174 kb on - strand at 676.178 kb on + strand at 676.185 kb on + strand at 676.290 kb on + strand at 676.291 kb on - strand at 676.310 kb on - strand at 676.342 kb on + strand at 676.342 kb on + strand at 676.342 kb on + strand at 676.342 kb on + strand at 676.342 kb on + strand at 676.342 kb on + strand at 676.343 kb on - strand at 676.343 kb on - strand at 676.343 kb on - strand at 676.343 kb on - strand at 676.343 kb on - strand at 679.872 kb on - strand at 679.902 kb on + strand at 679.962 kb on + strand at 679.969 kb on + strand at 679.969 kb on + strand at 679.969 kb on + strand at 679.970 kb on - strand at 679.970 kb on - strand at 679.972 kb on + strand at 679.972 kb on + strand at 679.973 kb on - strand at 679.973 kb on - strand at 679.973 kb on - strand at 679.973 kb on - strand at 680.101 kb on + strand at 680.101 kb on + strand at 680.102 kb on - strand at 680.102 kb on - strand at 680.120 kb on - strand, within Ga0059261_0638 at 680.197 kb on + strand, within Ga0059261_0638 at 680.197 kb on + strand, within Ga0059261_0638 at 680.198 kb on - strand, within Ga0059261_0638 at 680.198 kb on - strand, within Ga0059261_0638 at 680.198 kb on - strand, within Ga0059261_0638 at 680.198 kb on - strand, within Ga0059261_0638 at 680.264 kb on + strand at 680.313 kb on + strand, within Ga0059261_0638 at 680.313 kb on + strand, within Ga0059261_0638 at 680.313 kb on + strand, within Ga0059261_0638 at 680.313 kb on + strand, within Ga0059261_0638 at 680.313 kb on + strand, within Ga0059261_0638 at 680.314 kb on - strand, within Ga0059261_0638 at 680.386 kb on + strand, within Ga0059261_0638 at 680.386 kb on + strand, within Ga0059261_0638 at 680.386 kb on + strand, within Ga0059261_0638 at 680.386 kb on + strand, within Ga0059261_0638 at 680.387 kb on - strand, within Ga0059261_0638 at 680.387 kb on - strand, within Ga0059261_0638
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 675,986 + Ga0059261_0635 0.82 -1.4 675,986 + Ga0059261_0635 0.82 -0.7 675,986 + Ga0059261_0635 0.82 -0.6 675,986 + Ga0059261_0635 0.82 +0.1 675,986 + Ga0059261_0635 0.82 +0.3 675,987 - Ga0059261_0635 0.82 +1.3 675,987 - Ga0059261_0635 0.82 -0.1 676,026 + Ga0059261_0635 0.86 +0.9 676,026 + Ga0059261_0635 0.86 -0.5 676,026 + Ga0059261_0635 0.86 +0.9 676,026 + Ga0059261_0635 0.86 -1.3 676,026 + Ga0059261_0635 0.86 +0.2 676,027 - Ga0059261_0635 0.86 +0.6 676,167 + +0.7 676,167 + +0.4 676,168 - -0.5 676,168 - +0.3 676,168 - +0.4 676,168 - +0.7 676,168 - -0.2 676,168 - -0.3 676,168 - +1.4 676,173 + -1.0 676,173 + -0.6 676,173 + -0.2 676,173 + -0.2 676,173 + -0.8 676,173 + +0.9 676,174 - -0.2 676,174 - -0.1 676,174 - -0.0 676,174 - +0.4 676,174 - +0.6 676,178 + -0.4 676,185 + +0.6 676,290 + +0.3 676,291 - -0.6 676,310 - +0.4 676,342 + -0.1 676,342 + -0.2 676,342 + +0.7 676,342 + +0.4 676,342 + -0.1 676,342 + -0.5 676,343 - +0.5 676,343 - -0.3 676,343 - -0.3 676,343 - -0.1 676,343 - +0.1 679,872 - +0.1 679,902 + -1.0 679,962 + +0.1 679,969 + +0.1 679,969 + -0.6 679,969 + -0.2 679,970 - -0.4 679,970 - -0.1 679,972 + +0.9 679,972 + -0.8 679,973 - +0.3 679,973 - +0.0 679,973 - +0.3 679,973 - +0.2 680,101 + -0.1 680,101 + +0.5 680,102 - +0.4 680,102 - +0.2 680,120 - Ga0059261_0638 0.10 -1.1 680,197 + Ga0059261_0638 0.15 -2.7 680,197 + Ga0059261_0638 0.15 -3.7 680,198 - Ga0059261_0638 0.15 -2.4 680,198 - Ga0059261_0638 0.15 -2.2 680,198 - Ga0059261_0638 0.15 -3.1 680,198 - Ga0059261_0638 0.15 -4.0 680,264 + -0.1 680,313 + Ga0059261_0638 0.23 -4.9 680,313 + Ga0059261_0638 0.23 -2.2 680,313 + Ga0059261_0638 0.23 -3.6 680,313 + Ga0059261_0638 0.23 -3.1 680,313 + Ga0059261_0638 0.23 -2.5 680,314 - Ga0059261_0638 0.23 -4.6 680,386 + Ga0059261_0638 0.27 -2.4 680,386 + Ga0059261_0638 0.27 -3.9 680,386 + Ga0059261_0638 0.27 -4.5 680,386 + Ga0059261_0638 0.27 -3.5 680,387 - Ga0059261_0638 0.28 -3.9 680,387 - Ga0059261_0638 0.28 -3.6
Or see this region's nucleotide sequence