Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0405

Experiment: Rifampicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0403 and Ga0059261_0404 are separated by 141 nucleotidesGa0059261_0404 and Ga0059261_0405 are separated by 25 nucleotidesGa0059261_0405 and Ga0059261_0406 are separated by 266 nucleotides Ga0059261_0403: Ga0059261_0403 - Micrococcal nuclease (thermonuclease) homologs, at 387,148 to 387,606 _0403 Ga0059261_0404: Ga0059261_0404 - Ketosteroid isomerase homolog, at 387,748 to 388,176 _0404 Ga0059261_0405: Ga0059261_0405 - Uncharacterized conserved protein, at 388,202 to 388,660 _0405 Ga0059261_0406: Ga0059261_0406 - Predicted transcriptional regulators, at 388,927 to 389,274 _0406 Position (kb) 388 389Strain fitness (log2 ratio) -2 -1 0 1 2at 387.283 kb on + strandat 387.283 kb on + strand, within Ga0059261_0403at 387.283 kb on + strand, within Ga0059261_0403at 387.284 kb on - strand, within Ga0059261_0403at 387.284 kb on - strand, within Ga0059261_0403at 387.284 kb on - strand, within Ga0059261_0403at 387.300 kb on + strand, within Ga0059261_0403at 387.475 kb on + strand, within Ga0059261_0403at 387.476 kb on - strand, within Ga0059261_0403at 387.476 kb on - strandat 387.476 kb on - strand, within Ga0059261_0403at 387.476 kb on - strand, within Ga0059261_0403at 387.630 kb on + strandat 387.630 kb on + strandat 387.630 kb on + strandat 387.630 kb on + strandat 387.631 kb on - strandat 387.631 kb on - strandat 387.631 kb on - strandat 387.634 kb on + strandat 387.634 kb on + strandat 387.634 kb on + strandat 387.634 kb on + strandat 387.634 kb on + strandat 387.634 kb on + strandat 387.634 kb on + strandat 387.634 kb on + strandat 387.635 kb on - strandat 387.635 kb on - strandat 387.635 kb on - strandat 387.635 kb on - strandat 387.635 kb on - strandat 387.637 kb on - strandat 387.693 kb on + strandat 387.791 kb on + strand, within Ga0059261_0404at 387.791 kb on + strand, within Ga0059261_0404at 387.791 kb on + strand, within Ga0059261_0404at 387.791 kb on + strand, within Ga0059261_0404at 387.792 kb on - strand, within Ga0059261_0404at 387.792 kb on - strand, within Ga0059261_0404at 387.792 kb on - strand, within Ga0059261_0404at 387.797 kb on + strand, within Ga0059261_0404at 387.797 kb on + strand, within Ga0059261_0404at 387.798 kb on - strand, within Ga0059261_0404at 387.798 kb on - strand, within Ga0059261_0404at 387.798 kb on - strand, within Ga0059261_0404at 387.798 kb on - strand, within Ga0059261_0404at 388.040 kb on + strand, within Ga0059261_0404at 388.041 kb on - strand, within Ga0059261_0404at 388.041 kb on - strand, within Ga0059261_0404at 388.041 kb on - strand, within Ga0059261_0404at 388.041 kb on - strand, within Ga0059261_0404at 388.041 kb on - strand, within Ga0059261_0404at 388.041 kb on - strand, within Ga0059261_0404at 388.064 kb on + strand, within Ga0059261_0404at 388.064 kb on + strand, within Ga0059261_0404at 388.065 kb on - strand, within Ga0059261_0404at 388.065 kb on - strand, within Ga0059261_0404at 388.065 kb on - strand, within Ga0059261_0404at 388.065 kb on - strand, within Ga0059261_0404at 388.065 kb on - strand, within Ga0059261_0404at 388.065 kb on - strand, within Ga0059261_0404at 388.074 kb on + strand, within Ga0059261_0404at 388.074 kb on + strand, within Ga0059261_0404at 388.075 kb on - strand, within Ga0059261_0404at 388.075 kb on - strand, within Ga0059261_0404at 388.075 kb on - strand, within Ga0059261_0404at 388.075 kb on - strand, within Ga0059261_0404at 388.170 kb on + strandat 388.171 kb on - strandat 388.171 kb on - strandat 388.182 kb on + strandat 388.183 kb on - strandat 388.183 kb on - strandat 388.183 kb on - strandat 388.203 kb on + strandat 388.204 kb on - strandat 388.204 kb on - strandat 388.267 kb on + strand, within Ga0059261_0405at 388.267 kb on + strand, within Ga0059261_0405at 388.268 kb on - strand, within Ga0059261_0405at 388.268 kb on - strand, within Ga0059261_0405at 388.281 kb on + strand, within Ga0059261_0405at 388.372 kb on + strand, within Ga0059261_0405at 388.372 kb on + strand, within Ga0059261_0405at 388.372 kb on + strand, within Ga0059261_0405at 388.372 kb on + strand, within Ga0059261_0405at 388.372 kb on + strand, within Ga0059261_0405at 388.373 kb on - strand, within Ga0059261_0405at 388.373 kb on - strand, within Ga0059261_0405at 388.373 kb on - strand, within Ga0059261_0405at 388.373 kb on - strand, within Ga0059261_0405at 388.373 kb on - strand, within Ga0059261_0405at 388.373 kb on - strand, within Ga0059261_0405at 388.828 kb on + strandat 389.016 kb on - strand, within Ga0059261_0406at 389.016 kb on - strand, within Ga0059261_0406at 389.127 kb on + strand, within Ga0059261_0406at 389.127 kb on + strand, within Ga0059261_0406at 389.127 kb on + strand, within Ga0059261_0406at 389.127 kb on + strand, within Ga0059261_0406at 389.127 kb on + strand, within Ga0059261_0406at 389.127 kb on + strand, within Ga0059261_0406at 389.127 kb on + strand, within Ga0059261_0406at 389.127 kb on + strand, within Ga0059261_0406at 389.127 kb on + strand, within Ga0059261_0406at 389.128 kb on - strand, within Ga0059261_0406at 389.128 kb on - strand, within Ga0059261_0406at 389.128 kb on - strand, within Ga0059261_0406at 389.128 kb on - strand, within Ga0059261_0406at 389.128 kb on - strand, within Ga0059261_0406at 389.128 kb on - strand, within Ga0059261_0406at 389.128 kb on - strandat 389.128 kb on - strand, within Ga0059261_0406at 389.128 kb on - strand, within Ga0059261_0406at 389.128 kb on - strand, within Ga0059261_0406at 389.179 kb on + strand, within Ga0059261_0406at 389.179 kb on + strand, within Ga0059261_0406at 389.180 kb on - strand, within Ga0059261_0406at 389.214 kb on + strand, within Ga0059261_0406at 389.324 kb on + strandat 389.378 kb on - strandat 389.426 kb on + strandat 389.426 kb on + strandat 389.449 kb on - strandat 389.450 kb on + strandat 389.524 kb on + strandat 389.524 kb on + strandat 389.524 kb on + strandat 389.524 kb on + strandat 389.524 kb on + strandat 389.524 kb on + strandat 389.524 kb on + strandat 389.525 kb on - strandat 389.525 kb on - strandat 389.525 kb on - strandat 389.525 kb on - strandat 389.525 kb on - strandat 389.579 kb on - strandat 389.579 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml
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387,283 + +0.3
387,283 + Ga0059261_0403 0.29 -0.5
387,283 + Ga0059261_0403 0.29 +0.6
387,284 - Ga0059261_0403 0.30 -0.3
387,284 - Ga0059261_0403 0.30 +0.3
387,284 - Ga0059261_0403 0.30 +0.3
387,300 + Ga0059261_0403 0.33 +0.1
387,475 + Ga0059261_0403 0.71 -0.5
387,476 - Ga0059261_0403 0.71 -0.5
387,476 - +1.9
387,476 - Ga0059261_0403 0.71 +0.2
387,476 - Ga0059261_0403 0.71 -0.5
387,630 + +0.6
387,630 + +0.9
387,630 + +0.7
387,630 + -0.3
387,631 - +0.2
387,631 - -0.8
387,631 - +0.4
387,634 + +0.3
387,634 + +0.0
387,634 + +0.3
387,634 + -0.7
387,634 + +0.2
387,634 + -0.2
387,634 + +0.5
387,634 + -0.6
387,635 - -0.1
387,635 - -0.2
387,635 - -0.1
387,635 - -0.9
387,635 - +0.5
387,637 - +0.2
387,693 + -0.2
387,791 + Ga0059261_0404 0.10 +0.4
387,791 + Ga0059261_0404 0.10 -1.0
387,791 + Ga0059261_0404 0.10 -0.9
387,791 + Ga0059261_0404 0.10 +0.0
387,792 - Ga0059261_0404 0.10 -0.2
387,792 - Ga0059261_0404 0.10 -1.8
387,792 - Ga0059261_0404 0.10 +0.3
387,797 + Ga0059261_0404 0.11 +0.5
387,797 + Ga0059261_0404 0.11 +0.3
387,798 - Ga0059261_0404 0.12 -1.6
387,798 - Ga0059261_0404 0.12 -0.1
387,798 - Ga0059261_0404 0.12 +0.6
387,798 - Ga0059261_0404 0.12 +0.5
388,040 + Ga0059261_0404 0.68 +0.2
388,041 - Ga0059261_0404 0.68 -0.4
388,041 - Ga0059261_0404 0.68 -0.1
388,041 - Ga0059261_0404 0.68 +0.1
388,041 - Ga0059261_0404 0.68 -0.5
388,041 - Ga0059261_0404 0.68 +1.5
388,041 - Ga0059261_0404 0.68 -0.4
388,064 + Ga0059261_0404 0.74 -1.3
388,064 + Ga0059261_0404 0.74 -0.4
388,065 - Ga0059261_0404 0.74 -0.5
388,065 - Ga0059261_0404 0.74 -0.1
388,065 - Ga0059261_0404 0.74 -0.6
388,065 - Ga0059261_0404 0.74 -0.2
388,065 - Ga0059261_0404 0.74 -1.1
388,065 - Ga0059261_0404 0.74 -1.2
388,074 + Ga0059261_0404 0.76 -0.0
388,074 + Ga0059261_0404 0.76 +0.4
388,075 - Ga0059261_0404 0.76 +0.2
388,075 - Ga0059261_0404 0.76 -0.3
388,075 - Ga0059261_0404 0.76 -0.1
388,075 - Ga0059261_0404 0.76 -0.3
388,170 + -0.3
388,171 - -0.4
388,171 - +0.3
388,182 + -0.8
388,183 - +0.1
388,183 - -1.0
388,183 - +0.7
388,203 + -1.6
388,204 - -0.0
388,204 - -1.1
388,267 + Ga0059261_0405 0.14 -0.1
388,267 + Ga0059261_0405 0.14 +0.1
388,268 - Ga0059261_0405 0.14 +0.1
388,268 - Ga0059261_0405 0.14 +1.2
388,281 + Ga0059261_0405 0.17 +2.1
388,372 + Ga0059261_0405 0.37 +0.9
388,372 + Ga0059261_0405 0.37 -0.3
388,372 + Ga0059261_0405 0.37 -0.1
388,372 + Ga0059261_0405 0.37 +0.8
388,372 + Ga0059261_0405 0.37 +0.5
388,373 - Ga0059261_0405 0.37 -0.4
388,373 - Ga0059261_0405 0.37 -0.4
388,373 - Ga0059261_0405 0.37 +0.4
388,373 - Ga0059261_0405 0.37 -0.6
388,373 - Ga0059261_0405 0.37 +0.5
388,373 - Ga0059261_0405 0.37 +0.9
388,828 + -0.5
389,016 - Ga0059261_0406 0.26 +0.0
389,016 - Ga0059261_0406 0.26 +0.0
389,127 + Ga0059261_0406 0.57 -0.7
389,127 + Ga0059261_0406 0.57 +0.4
389,127 + Ga0059261_0406 0.57 -0.2
389,127 + Ga0059261_0406 0.57 +0.1
389,127 + Ga0059261_0406 0.57 +0.6
389,127 + Ga0059261_0406 0.57 -0.5
389,127 + Ga0059261_0406 0.57 +0.1
389,127 + Ga0059261_0406 0.57 +0.2
389,127 + Ga0059261_0406 0.57 +2.5
389,128 - Ga0059261_0406 0.58 +0.5
389,128 - Ga0059261_0406 0.58 +0.2
389,128 - Ga0059261_0406 0.58 -0.1
389,128 - Ga0059261_0406 0.58 -1.2
389,128 - Ga0059261_0406 0.58 -0.1
389,128 - Ga0059261_0406 0.58 +0.3
389,128 - +1.9
389,128 - Ga0059261_0406 0.58 +0.7
389,128 - Ga0059261_0406 0.58 -1.7
389,128 - Ga0059261_0406 0.58 +0.1
389,179 + Ga0059261_0406 0.72 -0.3
389,179 + Ga0059261_0406 0.72 +0.2
389,180 - Ga0059261_0406 0.73 +0.2
389,214 + Ga0059261_0406 0.82 -0.3
389,324 + -0.4
389,378 - -0.1
389,426 + +0.9
389,426 + +1.2
389,449 - -0.3
389,450 + -0.3
389,524 + +1.0
389,524 + +0.4
389,524 + -0.8
389,524 + -0.4
389,524 + -0.5
389,524 + -0.1
389,524 + +0.2
389,525 - -0.8
389,525 - +0.5
389,525 - +0.9
389,525 - +0.3
389,525 - +0.5
389,579 - +0.4
389,579 - +0.3

Or see this region's nucleotide sequence