Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0293

Experiment: Rifampicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0292 and Ga0059261_0293 are separated by 34 nucleotidesGa0059261_0293 and Ga0059261_0294 are separated by 74 nucleotidesGa0059261_0294 and Ga0059261_0295 overlap by 4 nucleotidesGa0059261_0295 and Ga0059261_0296 are separated by 81 nucleotides Ga0059261_0292: Ga0059261_0292 - acetyl-CoA carboxylase, biotin carboxylase subunit, at 276,208 to 277,572 _0292 Ga0059261_0293: Ga0059261_0293 - Predicted metal-dependent hydrolase, at 277,607 to 278,509 _0293 Ga0059261_0294: Ga0059261_0294 - arsenate reductase (glutaredoxin), at 278,584 to 278,919 _0294 Ga0059261_0295: Ga0059261_0295 - PAS domain S-box, at 278,916 to 279,290 _0295 Ga0059261_0296: Ga0059261_0296 - Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes, at 279,372 to 280,826 _0296 Position (kb) 277 278 279Strain fitness (log2 ratio) -2 -1 0 1 2at 277.651 kb on + strandat 277.651 kb on + strandat 277.651 kb on + strandat 277.652 kb on - strandat 277.652 kb on - strandat 277.652 kb on - strandat 277.652 kb on - strandat 277.720 kb on + strand, within Ga0059261_0293at 277.720 kb on + strand, within Ga0059261_0293at 277.720 kb on + strand, within Ga0059261_0293at 277.720 kb on + strand, within Ga0059261_0293at 277.720 kb on + strand, within Ga0059261_0293at 277.720 kb on + strand, within Ga0059261_0293at 277.721 kb on - strand, within Ga0059261_0293at 277.721 kb on - strand, within Ga0059261_0293at 277.721 kb on - strand, within Ga0059261_0293at 277.721 kb on - strand, within Ga0059261_0293at 277.721 kb on - strand, within Ga0059261_0293at 277.721 kb on - strand, within Ga0059261_0293at 277.721 kb on - strand, within Ga0059261_0293at 277.721 kb on - strand, within Ga0059261_0293at 277.786 kb on + strand, within Ga0059261_0293at 277.786 kb on + strand, within Ga0059261_0293at 277.786 kb on + strand, within Ga0059261_0293at 277.787 kb on - strand, within Ga0059261_0293at 277.787 kb on - strand, within Ga0059261_0293at 277.842 kb on + strand, within Ga0059261_0293at 277.842 kb on + strand, within Ga0059261_0293at 277.842 kb on + strand, within Ga0059261_0293at 277.842 kb on + strand, within Ga0059261_0293at 277.843 kb on - strand, within Ga0059261_0293at 277.843 kb on - strand, within Ga0059261_0293at 277.843 kb on - strand, within Ga0059261_0293at 277.843 kb on - strand, within Ga0059261_0293at 277.843 kb on - strand, within Ga0059261_0293at 277.843 kb on - strand, within Ga0059261_0293at 277.843 kb on - strand, within Ga0059261_0293at 277.843 kb on - strand, within Ga0059261_0293at 277.884 kb on + strand, within Ga0059261_0293at 277.884 kb on + strand, within Ga0059261_0293at 277.884 kb on + strand, within Ga0059261_0293at 278.070 kb on + strand, within Ga0059261_0293at 278.070 kb on + strand, within Ga0059261_0293at 278.070 kb on + strand, within Ga0059261_0293at 278.080 kb on - strand, within Ga0059261_0293at 278.080 kb on - strand, within Ga0059261_0293at 278.094 kb on + strand, within Ga0059261_0293at 278.094 kb on + strand, within Ga0059261_0293at 278.094 kb on + strand, within Ga0059261_0293at 278.094 kb on + strand, within Ga0059261_0293at 278.094 kb on + strand, within Ga0059261_0293at 278.095 kb on - strand, within Ga0059261_0293at 278.095 kb on - strand, within Ga0059261_0293at 278.095 kb on - strand, within Ga0059261_0293at 278.095 kb on - strand, within Ga0059261_0293at 278.095 kb on - strand, within Ga0059261_0293at 278.095 kb on - strand, within Ga0059261_0293at 278.154 kb on + strand, within Ga0059261_0293at 278.154 kb on + strand, within Ga0059261_0293at 278.155 kb on - strand, within Ga0059261_0293at 278.155 kb on - strand, within Ga0059261_0293at 278.216 kb on - strand, within Ga0059261_0293at 278.217 kb on + strand, within Ga0059261_0293at 278.217 kb on + strand, within Ga0059261_0293at 278.217 kb on + strand, within Ga0059261_0293at 278.217 kb on + strand, within Ga0059261_0293at 278.217 kb on + strand, within Ga0059261_0293at 278.217 kb on + strand, within Ga0059261_0293at 278.217 kb on + strand, within Ga0059261_0293at 278.217 kb on + strand, within Ga0059261_0293at 278.217 kb on + strand, within Ga0059261_0293at 278.217 kb on + strand, within Ga0059261_0293at 278.217 kb on + strand, within Ga0059261_0293at 278.218 kb on - strand, within Ga0059261_0293at 278.218 kb on - strand, within Ga0059261_0293at 278.218 kb on - strand, within Ga0059261_0293at 278.218 kb on - strand, within Ga0059261_0293at 278.218 kb on - strand, within Ga0059261_0293at 278.218 kb on - strand, within Ga0059261_0293at 278.218 kb on - strand, within Ga0059261_0293at 278.218 kb on - strand, within Ga0059261_0293at 278.218 kb on - strand, within Ga0059261_0293at 278.218 kb on - strand, within Ga0059261_0293at 278.218 kb on - strand, within Ga0059261_0293at 278.218 kb on - strand, within Ga0059261_0293at 278.385 kb on + strand, within Ga0059261_0293at 278.385 kb on + strand, within Ga0059261_0293at 278.386 kb on - strand, within Ga0059261_0293at 278.386 kb on - strand, within Ga0059261_0293at 278.425 kb on + strandat 278.550 kb on + strandat 278.550 kb on + strandat 278.550 kb on + strandat 278.551 kb on - strandat 278.551 kb on - strandat 278.551 kb on - strandat 278.554 kb on + strandat 278.554 kb on + strandat 278.554 kb on + strandat 278.554 kb on + strandat 278.554 kb on + strandat 278.555 kb on - strandat 278.555 kb on - strandat 278.555 kb on - strandat 278.555 kb on - strandat 278.599 kb on + strandat 278.599 kb on + strandat 278.599 kb on + strandat 278.599 kb on + strandat 278.599 kb on + strandat 278.599 kb on + strandat 278.600 kb on - strandat 278.600 kb on - strandat 278.600 kb on - strandat 278.600 kb on - strandat 278.600 kb on - strandat 278.600 kb on - strandat 278.680 kb on + strand, within Ga0059261_0294at 278.680 kb on + strand, within Ga0059261_0294at 278.680 kb on + strand, within Ga0059261_0294at 278.681 kb on - strand, within Ga0059261_0294at 278.681 kb on - strand, within Ga0059261_0294at 278.681 kb on - strand, within Ga0059261_0294at 278.681 kb on - strand, within Ga0059261_0294at 278.722 kb on + strand, within Ga0059261_0294at 278.722 kb on + strand, within Ga0059261_0294at 278.723 kb on - strand, within Ga0059261_0294at 278.723 kb on - strand, within Ga0059261_0294at 278.723 kb on - strand, within Ga0059261_0294at 278.723 kb on - strand, within Ga0059261_0294at 278.960 kb on + strand, within Ga0059261_0295at 278.965 kb on + strand, within Ga0059261_0295at 278.965 kb on + strand, within Ga0059261_0295at 278.966 kb on - strand, within Ga0059261_0295at 278.971 kb on + strand, within Ga0059261_0295at 278.972 kb on - strand, within Ga0059261_0295at 278.972 kb on - strand, within Ga0059261_0295at 278.972 kb on - strand, within Ga0059261_0295at 279.062 kb on + strand, within Ga0059261_0295at 279.062 kb on + strand, within Ga0059261_0295at 279.063 kb on - strand, within Ga0059261_0295at 279.063 kb on - strand, within Ga0059261_0295at 279.130 kb on + strand, within Ga0059261_0295at 279.130 kb on + strand, within Ga0059261_0295at 279.130 kb on + strand, within Ga0059261_0295at 279.130 kb on + strand, within Ga0059261_0295at 279.130 kb on + strand, within Ga0059261_0295at 279.130 kb on + strand, within Ga0059261_0295at 279.131 kb on - strand, within Ga0059261_0295at 279.131 kb on - strand, within Ga0059261_0295at 279.131 kb on - strand, within Ga0059261_0295at 279.131 kb on - strand, within Ga0059261_0295at 279.131 kb on - strand, within Ga0059261_0295at 279.131 kb on - strand, within Ga0059261_0295at 279.190 kb on + strand, within Ga0059261_0295at 279.191 kb on - strand, within Ga0059261_0295at 279.191 kb on - strand, within Ga0059261_0295at 279.191 kb on - strand, within Ga0059261_0295at 279.301 kb on + strandat 279.302 kb on - strandat 279.316 kb on + strandat 279.316 kb on + strandat 279.317 kb on - strandat 279.326 kb on + strandat 279.326 kb on + strandat 279.326 kb on + strandat 279.327 kb on - strandat 279.327 kb on - strandat 279.327 kb on - strandat 279.332 kb on + strandat 279.332 kb on + strandat 279.332 kb on + strandat 279.332 kb on + strandat 279.332 kb on + strandat 279.332 kb on + strandat 279.333 kb on - strandat 279.333 kb on - strandat 279.333 kb on - strandat 279.333 kb on - strandat 279.333 kb on - strandat 279.333 kb on - strandat 279.474 kb on + strandat 279.474 kb on + strandat 279.474 kb on + strandat 279.474 kb on + strandat 279.474 kb on + strandat 279.474 kb on + strandat 279.475 kb on - strandat 279.475 kb on - strandat 279.475 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml
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277,651 + +0.1
277,651 + +1.4
277,651 + +1.0
277,652 - -0.5
277,652 - -0.6
277,652 - +0.1
277,652 - -0.5
277,720 + Ga0059261_0293 0.13 +0.9
277,720 + Ga0059261_0293 0.13 +0.2
277,720 + Ga0059261_0293 0.13 -0.4
277,720 + Ga0059261_0293 0.13 -0.6
277,720 + Ga0059261_0293 0.13 +0.7
277,720 + Ga0059261_0293 0.13 -0.0
277,721 - Ga0059261_0293 0.13 -1.0
277,721 - Ga0059261_0293 0.13 +0.2
277,721 - Ga0059261_0293 0.13 +0.8
277,721 - Ga0059261_0293 0.13 -0.1
277,721 - Ga0059261_0293 0.13 +0.3
277,721 - Ga0059261_0293 0.13 -0.2
277,721 - Ga0059261_0293 0.13 +0.1
277,721 - Ga0059261_0293 0.13 +0.9
277,786 + Ga0059261_0293 0.20 +0.9
277,786 + Ga0059261_0293 0.20 +0.0
277,786 + Ga0059261_0293 0.20 +0.4
277,787 - Ga0059261_0293 0.20 +0.5
277,787 - Ga0059261_0293 0.20 +0.3
277,842 + Ga0059261_0293 0.26 -2.1
277,842 + Ga0059261_0293 0.26 +0.4
277,842 + Ga0059261_0293 0.26 +0.1
277,842 + Ga0059261_0293 0.26 -0.6
277,843 - Ga0059261_0293 0.26 -0.0
277,843 - Ga0059261_0293 0.26 +0.9
277,843 - Ga0059261_0293 0.26 -0.4
277,843 - Ga0059261_0293 0.26 -0.3
277,843 - Ga0059261_0293 0.26 -0.1
277,843 - Ga0059261_0293 0.26 -1.1
277,843 - Ga0059261_0293 0.26 -0.4
277,843 - Ga0059261_0293 0.26 +0.5
277,884 + Ga0059261_0293 0.31 -0.1
277,884 + Ga0059261_0293 0.31 -0.9
277,884 + Ga0059261_0293 0.31 -0.7
278,070 + Ga0059261_0293 0.51 -0.4
278,070 + Ga0059261_0293 0.51 -0.1
278,070 + Ga0059261_0293 0.51 -0.3
278,080 - Ga0059261_0293 0.52 +0.3
278,080 - Ga0059261_0293 0.52 +1.5
278,094 + Ga0059261_0293 0.54 +1.2
278,094 + Ga0059261_0293 0.54 +1.0
278,094 + Ga0059261_0293 0.54 -1.3
278,094 + Ga0059261_0293 0.54 -0.9
278,094 + Ga0059261_0293 0.54 -0.6
278,095 - Ga0059261_0293 0.54 -0.3
278,095 - Ga0059261_0293 0.54 -0.3
278,095 - Ga0059261_0293 0.54 +0.4
278,095 - Ga0059261_0293 0.54 +0.6
278,095 - Ga0059261_0293 0.54 +0.8
278,095 - Ga0059261_0293 0.54 +0.7
278,154 + Ga0059261_0293 0.61 -0.7
278,154 + Ga0059261_0293 0.61 +0.4
278,155 - Ga0059261_0293 0.61 -0.3
278,155 - Ga0059261_0293 0.61 -0.7
278,216 - Ga0059261_0293 0.67 -0.4
278,217 + Ga0059261_0293 0.68 +0.3
278,217 + Ga0059261_0293 0.68 +0.4
278,217 + Ga0059261_0293 0.68 +2.1
278,217 + Ga0059261_0293 0.68 -0.9
278,217 + Ga0059261_0293 0.68 -0.1
278,217 + Ga0059261_0293 0.68 +1.2
278,217 + Ga0059261_0293 0.68 -0.4
278,217 + Ga0059261_0293 0.68 -1.9
278,217 + Ga0059261_0293 0.68 +0.3
278,217 + Ga0059261_0293 0.68 -0.2
278,217 + Ga0059261_0293 0.68 +0.6
278,218 - Ga0059261_0293 0.68 +0.2
278,218 - Ga0059261_0293 0.68 -0.5
278,218 - Ga0059261_0293 0.68 -0.5
278,218 - Ga0059261_0293 0.68 +0.1
278,218 - Ga0059261_0293 0.68 -0.0
278,218 - Ga0059261_0293 0.68 -0.8
278,218 - Ga0059261_0293 0.68 -0.3
278,218 - Ga0059261_0293 0.68 +0.4
278,218 - Ga0059261_0293 0.68 +0.3
278,218 - Ga0059261_0293 0.68 -0.7
278,218 - Ga0059261_0293 0.68 -1.2
278,218 - Ga0059261_0293 0.68 +0.4
278,385 + Ga0059261_0293 0.86 -0.7
278,385 + Ga0059261_0293 0.86 -1.2
278,386 - Ga0059261_0293 0.86 -0.1
278,386 - Ga0059261_0293 0.86 -0.1
278,425 + +0.7
278,550 + -0.2
278,550 + -0.4
278,550 + -0.4
278,551 - +0.2
278,551 - -0.5
278,551 - +0.1
278,554 + +0.5
278,554 + -0.1
278,554 + +0.9
278,554 + -0.1
278,554 + -0.4
278,555 - +1.2
278,555 - +0.5
278,555 - -0.3
278,555 - -1.0
278,599 + +0.2
278,599 + -0.0
278,599 + +0.7
278,599 + +0.7
278,599 + -0.4
278,599 + -0.0
278,600 - -0.1
278,600 - -0.0
278,600 - -0.7
278,600 - +0.3
278,600 - +0.5
278,600 - -1.7
278,680 + Ga0059261_0294 0.29 -0.8
278,680 + Ga0059261_0294 0.29 -0.5
278,680 + Ga0059261_0294 0.29 +1.5
278,681 - Ga0059261_0294 0.29 -0.4
278,681 - Ga0059261_0294 0.29 -0.2
278,681 - Ga0059261_0294 0.29 -0.8
278,681 - Ga0059261_0294 0.29 -0.3
278,722 + Ga0059261_0294 0.41 +0.5
278,722 + Ga0059261_0294 0.41 -1.3
278,723 - Ga0059261_0294 0.41 -1.1
278,723 - Ga0059261_0294 0.41 -1.9
278,723 - Ga0059261_0294 0.41 +0.0
278,723 - Ga0059261_0294 0.41 -0.7
278,960 + Ga0059261_0295 0.12 -0.5
278,965 + Ga0059261_0295 0.13 -0.3
278,965 + Ga0059261_0295 0.13 +0.4
278,966 - Ga0059261_0295 0.13 +0.0
278,971 + Ga0059261_0295 0.15 -0.1
278,972 - Ga0059261_0295 0.15 -0.7
278,972 - Ga0059261_0295 0.15 +0.1
278,972 - Ga0059261_0295 0.15 -0.1
279,062 + Ga0059261_0295 0.39 -0.7
279,062 + Ga0059261_0295 0.39 +0.2
279,063 - Ga0059261_0295 0.39 -0.4
279,063 - Ga0059261_0295 0.39 -0.3
279,130 + Ga0059261_0295 0.57 -0.0
279,130 + Ga0059261_0295 0.57 +0.2
279,130 + Ga0059261_0295 0.57 -0.5
279,130 + Ga0059261_0295 0.57 -0.4
279,130 + Ga0059261_0295 0.57 +0.2
279,130 + Ga0059261_0295 0.57 -0.7
279,131 - Ga0059261_0295 0.57 +1.3
279,131 - Ga0059261_0295 0.57 -0.5
279,131 - Ga0059261_0295 0.57 +0.0
279,131 - Ga0059261_0295 0.57 -0.8
279,131 - Ga0059261_0295 0.57 +0.2
279,131 - Ga0059261_0295 0.57 +1.9
279,190 + Ga0059261_0295 0.73 -0.1
279,191 - Ga0059261_0295 0.73 +0.3
279,191 - Ga0059261_0295 0.73 +0.3
279,191 - Ga0059261_0295 0.73 +0.1
279,301 + +0.2
279,302 - +0.9
279,316 + +0.1
279,316 + +0.8
279,317 - -0.4
279,326 + +0.3
279,326 + -0.4
279,326 + -0.1
279,327 - -0.4
279,327 - -0.5
279,327 - -0.7
279,332 + +0.9
279,332 + +0.4
279,332 + -0.1
279,332 + -1.2
279,332 + +0.7
279,332 + -0.1
279,333 - +0.1
279,333 - -0.0
279,333 - -0.5
279,333 - +1.2
279,333 - +0.3
279,333 - +0.2
279,474 + +0.3
279,474 + -0.4
279,474 + -1.2
279,474 + -0.1
279,474 + -0.3
279,474 + -0.0
279,475 - -0.8
279,475 - +0.1
279,475 - -0.7

Or see this region's nucleotide sequence