Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0092

Experiment: Rifampicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0091 and Ga0059261_0092 are separated by 135 nucleotidesGa0059261_0092 and Ga0059261_0093 overlap by 4 nucleotides Ga0059261_0091: Ga0059261_0091 - Outer membrane protein V, at 83,304 to 84,134 _0091 Ga0059261_0092: Ga0059261_0092 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 84,270 to 85,004 _0092 Ga0059261_0093: Ga0059261_0093 - Signal transduction histidine kinase, at 85,001 to 86,413 _0093 Position (kb) 84 85 86Strain fitness (log2 ratio) -1 0 1 2at 83.306 kb on - strandat 83.315 kb on - strandat 83.446 kb on + strand, within Ga0059261_0091at 83.446 kb on + strand, within Ga0059261_0091at 83.446 kb on + strandat 83.446 kb on + strand, within Ga0059261_0091at 83.446 kb on + strand, within Ga0059261_0091at 83.446 kb on + strand, within Ga0059261_0091at 83.446 kb on + strand, within Ga0059261_0091at 83.446 kb on + strand, within Ga0059261_0091at 83.447 kb on - strand, within Ga0059261_0091at 83.447 kb on - strand, within Ga0059261_0091at 83.447 kb on - strand, within Ga0059261_0091at 83.447 kb on - strand, within Ga0059261_0091at 83.447 kb on - strand, within Ga0059261_0091at 83.497 kb on + strand, within Ga0059261_0091at 83.545 kb on + strand, within Ga0059261_0091at 83.545 kb on + strand, within Ga0059261_0091at 83.546 kb on - strand, within Ga0059261_0091at 83.546 kb on - strand, within Ga0059261_0091at 83.555 kb on + strand, within Ga0059261_0091at 83.555 kb on + strand, within Ga0059261_0091at 83.555 kb on + strand, within Ga0059261_0091at 83.555 kb on + strand, within Ga0059261_0091at 83.555 kb on + strand, within Ga0059261_0091at 83.555 kb on + strand, within Ga0059261_0091at 83.555 kb on + strand, within Ga0059261_0091at 83.555 kb on + strand, within Ga0059261_0091at 83.556 kb on - strand, within Ga0059261_0091at 83.556 kb on - strand, within Ga0059261_0091at 83.556 kb on - strand, within Ga0059261_0091at 83.556 kb on - strand, within Ga0059261_0091at 83.556 kb on - strand, within Ga0059261_0091at 83.556 kb on - strand, within Ga0059261_0091at 83.556 kb on - strand, within Ga0059261_0091at 83.557 kb on + strand, within Ga0059261_0091at 83.557 kb on + strand, within Ga0059261_0091at 83.557 kb on + strand, within Ga0059261_0091at 83.557 kb on + strand, within Ga0059261_0091at 83.557 kb on + strand, within Ga0059261_0091at 83.557 kb on + strand, within Ga0059261_0091at 83.557 kb on + strand, within Ga0059261_0091at 83.557 kb on + strand, within Ga0059261_0091at 83.557 kb on + strand, within Ga0059261_0091at 83.558 kb on - strand, within Ga0059261_0091at 83.558 kb on - strand, within Ga0059261_0091at 83.558 kb on - strand, within Ga0059261_0091at 83.558 kb on - strand, within Ga0059261_0091at 83.558 kb on - strand, within Ga0059261_0091at 83.558 kb on - strand, within Ga0059261_0091at 83.558 kb on - strand, within Ga0059261_0091at 83.893 kb on + strand, within Ga0059261_0091at 83.893 kb on + strand, within Ga0059261_0091at 83.893 kb on + strand, within Ga0059261_0091at 83.894 kb on - strand, within Ga0059261_0091at 83.894 kb on - strand, within Ga0059261_0091at 83.894 kb on - strand, within Ga0059261_0091at 83.894 kb on - strand, within Ga0059261_0091at 83.908 kb on + strand, within Ga0059261_0091at 83.909 kb on - strand, within Ga0059261_0091at 83.909 kb on - strand, within Ga0059261_0091at 83.944 kb on + strand, within Ga0059261_0091at 83.944 kb on + strand, within Ga0059261_0091at 83.944 kb on + strand, within Ga0059261_0091at 83.944 kb on + strand, within Ga0059261_0091at 83.944 kb on + strand, within Ga0059261_0091at 83.944 kb on + strand, within Ga0059261_0091at 83.945 kb on - strand, within Ga0059261_0091at 83.945 kb on - strand, within Ga0059261_0091at 83.945 kb on - strand, within Ga0059261_0091at 83.945 kb on - strand, within Ga0059261_0091at 83.945 kb on - strandat 83.945 kb on - strand, within Ga0059261_0091at 83.974 kb on + strand, within Ga0059261_0091at 83.974 kb on + strand, within Ga0059261_0091at 83.974 kb on + strand, within Ga0059261_0091at 83.974 kb on + strandat 83.974 kb on + strand, within Ga0059261_0091at 83.975 kb on - strand, within Ga0059261_0091at 83.975 kb on - strand, within Ga0059261_0091at 83.975 kb on - strand, within Ga0059261_0091at 83.975 kb on - strand, within Ga0059261_0091at 83.975 kb on - strand, within Ga0059261_0091at 83.975 kb on - strand, within Ga0059261_0091at 83.975 kb on - strand, within Ga0059261_0091at 84.171 kb on + strandat 84.171 kb on + strandat 84.171 kb on + strandat 84.171 kb on + strandat 84.171 kb on + strandat 84.171 kb on + strandat 84.171 kb on + strandat 84.172 kb on - strandat 84.172 kb on - strandat 84.172 kb on - strandat 84.172 kb on - strandat 84.172 kb on - strandat 84.172 kb on - strandat 84.227 kb on + strandat 84.228 kb on - strandat 84.228 kb on - strandat 84.258 kb on + strandat 84.258 kb on + strandat 84.259 kb on - strandat 84.259 kb on - strandat 84.293 kb on + strandat 84.293 kb on + strandat 84.294 kb on - strandat 84.342 kb on + strandat 84.342 kb on + strandat 84.342 kb on + strandat 84.343 kb on - strandat 84.343 kb on - strandat 84.576 kb on + strand, within Ga0059261_0092at 84.576 kb on + strand, within Ga0059261_0092at 84.576 kb on + strand, within Ga0059261_0092at 84.576 kb on + strand, within Ga0059261_0092at 84.576 kb on + strand, within Ga0059261_0092at 84.576 kb on + strand, within Ga0059261_0092at 84.576 kb on + strand, within Ga0059261_0092at 84.576 kb on + strand, within Ga0059261_0092at 84.577 kb on - strand, within Ga0059261_0092at 84.577 kb on - strand, within Ga0059261_0092at 84.577 kb on - strand, within Ga0059261_0092at 84.577 kb on - strand, within Ga0059261_0092at 84.577 kb on - strand, within Ga0059261_0092at 84.577 kb on - strand, within Ga0059261_0092at 84.618 kb on - strand, within Ga0059261_0092at 84.811 kb on + strand, within Ga0059261_0092at 84.811 kb on + strand, within Ga0059261_0092at 84.812 kb on - strand, within Ga0059261_0092at 84.812 kb on - strand, within Ga0059261_0092at 84.812 kb on - strand, within Ga0059261_0092at 84.812 kb on - strand, within Ga0059261_0092at 84.837 kb on + strand, within Ga0059261_0092at 84.837 kb on + strand, within Ga0059261_0092at 84.837 kb on + strand, within Ga0059261_0092at 84.837 kb on + strand, within Ga0059261_0092at 84.837 kb on + strand, within Ga0059261_0092at 84.838 kb on - strand, within Ga0059261_0092at 84.838 kb on - strand, within Ga0059261_0092at 84.864 kb on - strand, within Ga0059261_0092at 84.963 kb on + strandat 84.963 kb on + strandat 84.966 kb on + strandat 84.966 kb on + strandat 84.966 kb on + strandat 84.966 kb on + strandat 84.966 kb on + strandat 84.966 kb on + strandat 84.966 kb on + strandat 84.967 kb on - strandat 84.967 kb on - strandat 84.967 kb on - strandat 85.229 kb on + strand, within Ga0059261_0093at 85.229 kb on + strand, within Ga0059261_0093at 85.229 kb on + strand, within Ga0059261_0093at 85.230 kb on - strand, within Ga0059261_0093at 85.246 kb on + strand, within Ga0059261_0093at 85.246 kb on + strand, within Ga0059261_0093at 85.246 kb on + strand, within Ga0059261_0093at 85.247 kb on - strand, within Ga0059261_0093at 85.247 kb on - strand, within Ga0059261_0093at 85.247 kb on - strand, within Ga0059261_0093at 85.307 kb on - strand, within Ga0059261_0093at 85.353 kb on + strand, within Ga0059261_0093at 85.354 kb on - strand, within Ga0059261_0093at 85.364 kb on - strand, within Ga0059261_0093at 85.364 kb on - strand, within Ga0059261_0093at 85.591 kb on + strand, within Ga0059261_0093at 85.636 kb on + strand, within Ga0059261_0093at 85.637 kb on - strand, within Ga0059261_0093at 85.796 kb on - strand, within Ga0059261_0093at 85.865 kb on + strand, within Ga0059261_0093at 85.865 kb on + strand, within Ga0059261_0093at 85.865 kb on + strand, within Ga0059261_0093at 85.866 kb on - strand, within Ga0059261_0093at 85.866 kb on - strand, within Ga0059261_0093at 85.866 kb on - strand, within Ga0059261_0093

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml
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83,306 - +0.3
83,315 - -1.3
83,446 + Ga0059261_0091 0.17 -1.1
83,446 + Ga0059261_0091 0.17 -0.7
83,446 + +0.3
83,446 + Ga0059261_0091 0.17 -0.0
83,446 + Ga0059261_0091 0.17 +0.1
83,446 + Ga0059261_0091 0.17 -0.8
83,446 + Ga0059261_0091 0.17 +0.6
83,446 + Ga0059261_0091 0.17 +0.2
83,447 - Ga0059261_0091 0.17 +0.3
83,447 - Ga0059261_0091 0.17 +0.5
83,447 - Ga0059261_0091 0.17 -1.2
83,447 - Ga0059261_0091 0.17 -0.5
83,447 - Ga0059261_0091 0.17 +0.3
83,497 + Ga0059261_0091 0.23 -1.7
83,545 + Ga0059261_0091 0.29 -1.2
83,545 + Ga0059261_0091 0.29 -0.5
83,546 - Ga0059261_0091 0.29 +0.0
83,546 - Ga0059261_0091 0.29 +0.6
83,555 + Ga0059261_0091 0.30 +0.8
83,555 + Ga0059261_0091 0.30 -0.2
83,555 + Ga0059261_0091 0.30 +1.2
83,555 + Ga0059261_0091 0.30 +1.1
83,555 + Ga0059261_0091 0.30 +1.2
83,555 + Ga0059261_0091 0.30 -1.0
83,555 + Ga0059261_0091 0.30 -0.8
83,555 + Ga0059261_0091 0.30 +0.5
83,556 - Ga0059261_0091 0.30 -0.3
83,556 - Ga0059261_0091 0.30 -1.0
83,556 - Ga0059261_0091 0.30 +0.1
83,556 - Ga0059261_0091 0.30 -0.3
83,556 - Ga0059261_0091 0.30 +0.6
83,556 - Ga0059261_0091 0.30 +0.4
83,556 - Ga0059261_0091 0.30 +0.3
83,557 + Ga0059261_0091 0.30 -0.4
83,557 + Ga0059261_0091 0.30 +0.3
83,557 + Ga0059261_0091 0.30 -0.8
83,557 + Ga0059261_0091 0.30 -0.5
83,557 + Ga0059261_0091 0.30 -1.4
83,557 + Ga0059261_0091 0.30 -0.5
83,557 + Ga0059261_0091 0.30 +0.5
83,557 + Ga0059261_0091 0.30 -0.5
83,557 + Ga0059261_0091 0.30 -0.5
83,558 - Ga0059261_0091 0.31 +0.6
83,558 - Ga0059261_0091 0.31 +0.1
83,558 - Ga0059261_0091 0.31 +1.4
83,558 - Ga0059261_0091 0.31 +0.3
83,558 - Ga0059261_0091 0.31 +0.4
83,558 - Ga0059261_0091 0.31 +0.1
83,558 - Ga0059261_0091 0.31 -0.8
83,893 + Ga0059261_0091 0.71 +1.2
83,893 + Ga0059261_0091 0.71 -0.0
83,893 + Ga0059261_0091 0.71 +0.9
83,894 - Ga0059261_0091 0.71 -0.2
83,894 - Ga0059261_0091 0.71 -1.1
83,894 - Ga0059261_0091 0.71 -0.3
83,894 - Ga0059261_0091 0.71 +0.7
83,908 + Ga0059261_0091 0.73 -0.6
83,909 - Ga0059261_0091 0.73 -0.6
83,909 - Ga0059261_0091 0.73 +1.5
83,944 + Ga0059261_0091 0.77 -1.0
83,944 + Ga0059261_0091 0.77 -0.5
83,944 + Ga0059261_0091 0.77 -0.0
83,944 + Ga0059261_0091 0.77 +0.0
83,944 + Ga0059261_0091 0.77 +0.9
83,944 + Ga0059261_0091 0.77 +0.5
83,945 - Ga0059261_0091 0.77 -0.2
83,945 - Ga0059261_0091 0.77 -0.0
83,945 - Ga0059261_0091 0.77 -0.3
83,945 - Ga0059261_0091 0.77 -1.0
83,945 - +0.3
83,945 - Ga0059261_0091 0.77 +0.2
83,974 + Ga0059261_0091 0.81 +0.2
83,974 + Ga0059261_0091 0.81 -0.7
83,974 + Ga0059261_0091 0.81 +0.1
83,974 + -0.7
83,974 + Ga0059261_0091 0.81 -0.3
83,975 - Ga0059261_0091 0.81 +1.3
83,975 - Ga0059261_0091 0.81 -0.0
83,975 - Ga0059261_0091 0.81 -0.2
83,975 - Ga0059261_0091 0.81 -1.1
83,975 - Ga0059261_0091 0.81 -0.3
83,975 - Ga0059261_0091 0.81 +0.4
83,975 - Ga0059261_0091 0.81 +0.8
84,171 + +0.5
84,171 + +0.4
84,171 + -0.7
84,171 + -0.3
84,171 + -0.1
84,171 + -1.1
84,171 + -0.1
84,172 - +0.2
84,172 - -0.9
84,172 - -0.1
84,172 - +0.3
84,172 - +1.5
84,172 - -0.1
84,227 + +0.2
84,228 - -0.0
84,228 - +0.5
84,258 + -0.3
84,258 + -0.6
84,259 - +0.2
84,259 - -0.8
84,293 + +0.1
84,293 + +0.9
84,294 - +0.3
84,342 + -0.2
84,342 + +0.4
84,342 + +0.4
84,343 - +0.2
84,343 - +1.5
84,576 + Ga0059261_0092 0.42 +0.7
84,576 + Ga0059261_0092 0.42 +1.3
84,576 + Ga0059261_0092 0.42 +0.4
84,576 + Ga0059261_0092 0.42 +0.3
84,576 + Ga0059261_0092 0.42 -0.9
84,576 + Ga0059261_0092 0.42 -0.3
84,576 + Ga0059261_0092 0.42 +0.6
84,576 + Ga0059261_0092 0.42 -1.1
84,577 - Ga0059261_0092 0.42 +0.4
84,577 - Ga0059261_0092 0.42 +0.3
84,577 - Ga0059261_0092 0.42 -0.9
84,577 - Ga0059261_0092 0.42 -0.3
84,577 - Ga0059261_0092 0.42 -0.3
84,577 - Ga0059261_0092 0.42 +0.1
84,618 - Ga0059261_0092 0.47 +0.1
84,811 + Ga0059261_0092 0.74 -0.1
84,811 + Ga0059261_0092 0.74 -0.1
84,812 - Ga0059261_0092 0.74 -0.2
84,812 - Ga0059261_0092 0.74 -0.1
84,812 - Ga0059261_0092 0.74 -0.1
84,812 - Ga0059261_0092 0.74 -0.7
84,837 + Ga0059261_0092 0.77 -0.2
84,837 + Ga0059261_0092 0.77 -0.8
84,837 + Ga0059261_0092 0.77 -0.0
84,837 + Ga0059261_0092 0.77 +0.3
84,837 + Ga0059261_0092 0.77 +0.2
84,838 - Ga0059261_0092 0.77 -0.8
84,838 - Ga0059261_0092 0.77 +0.9
84,864 - Ga0059261_0092 0.81 +0.9
84,963 + +0.3
84,963 + -0.2
84,966 + +0.2
84,966 + +0.2
84,966 + +0.0
84,966 + -0.1
84,966 + +0.0
84,966 + -0.2
84,966 + -0.2
84,967 - +0.9
84,967 - +2.1
84,967 - +0.6
85,229 + Ga0059261_0093 0.16 +0.9
85,229 + Ga0059261_0093 0.16 -0.6
85,229 + Ga0059261_0093 0.16 -1.4
85,230 - Ga0059261_0093 0.16 +0.4
85,246 + Ga0059261_0093 0.17 +0.4
85,246 + Ga0059261_0093 0.17 +0.7
85,246 + Ga0059261_0093 0.17 +0.0
85,247 - Ga0059261_0093 0.17 +0.2
85,247 - Ga0059261_0093 0.17 +0.1
85,247 - Ga0059261_0093 0.17 -0.1
85,307 - Ga0059261_0093 0.22 +0.5
85,353 + Ga0059261_0093 0.25 +1.5
85,354 - Ga0059261_0093 0.25 +0.4
85,364 - Ga0059261_0093 0.26 -0.2
85,364 - Ga0059261_0093 0.26 +0.9
85,591 + Ga0059261_0093 0.42 +0.1
85,636 + Ga0059261_0093 0.45 +0.3
85,637 - Ga0059261_0093 0.45 -0.6
85,796 - Ga0059261_0093 0.56 +2.5
85,865 + Ga0059261_0093 0.61 +0.9
85,865 + Ga0059261_0093 0.61 +0.4
85,865 + Ga0059261_0093 0.61 +0.0
85,866 - Ga0059261_0093 0.61 -0.7
85,866 - Ga0059261_0093 0.61 +0.6
85,866 - Ga0059261_0093 0.61 +0.7

Or see this region's nucleotide sequence