Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS32085 and AZOBR_RS32090 overlap by 28 nucleotides AZOBR_RS32090 and AZOBR_RS32095 overlap by 4 nucleotides
AZOBR_RS32085: AZOBR_RS32085 - hypothetical protein, at 558,568 to 566,643
_RS32085
AZOBR_RS32090: AZOBR_RS32090 - putative Poly(beta-D-mannuronate) C5 epimerase 3, at 566,616 to 571,850
_RS32090
AZOBR_RS32095: AZOBR_RS32095 - hypothetical protein, at 571,847 to 572,386
_RS32095
Position (kb) 566
567
568
569
570
571
572 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 566.141 kb on + strand at 566.144 kb on + strand at 566.145 kb on - strand at 566.270 kb on + strand at 566.271 kb on - strand at 566.571 kb on - strand at 566.571 kb on - strand at 566.597 kb on + strand at 566.597 kb on + strand at 566.598 kb on - strand at 566.698 kb on + strand at 566.698 kb on + strand at 566.698 kb on + strand at 566.699 kb on - strand at 566.699 kb on - strand at 567.113 kb on + strand at 567.114 kb on - strand at 567.114 kb on - strand at 567.241 kb on + strand, within AZOBR_RS32090 at 567.241 kb on + strand, within AZOBR_RS32090 at 567.241 kb on + strand, within AZOBR_RS32090 at 567.242 kb on - strand, within AZOBR_RS32090 at 567.468 kb on + strand, within AZOBR_RS32090 at 567.468 kb on + strand, within AZOBR_RS32090 at 567.468 kb on + strand, within AZOBR_RS32090 at 567.468 kb on + strand, within AZOBR_RS32090 at 567.469 kb on - strand, within AZOBR_RS32090 at 567.691 kb on + strand, within AZOBR_RS32090 at 567.691 kb on + strand, within AZOBR_RS32090 at 567.691 kb on + strand, within AZOBR_RS32090 at 567.692 kb on - strand, within AZOBR_RS32090 at 568.597 kb on + strand, within AZOBR_RS32090 at 568.597 kb on + strand, within AZOBR_RS32090 at 568.598 kb on - strand, within AZOBR_RS32090 at 568.598 kb on - strand, within AZOBR_RS32090 at 568.647 kb on + strand, within AZOBR_RS32090 at 568.648 kb on - strand, within AZOBR_RS32090 at 568.648 kb on - strand, within AZOBR_RS32090 at 568.648 kb on - strand, within AZOBR_RS32090 at 568.648 kb on - strand, within AZOBR_RS32090 at 568.648 kb on - strand, within AZOBR_RS32090 at 568.648 kb on - strand, within AZOBR_RS32090 at 568.648 kb on - strand, within AZOBR_RS32090 at 568.648 kb on - strand, within AZOBR_RS32090 at 568.723 kb on + strand, within AZOBR_RS32090 at 568.723 kb on + strand, within AZOBR_RS32090 at 568.723 kb on + strand, within AZOBR_RS32090 at 568.723 kb on + strand, within AZOBR_RS32090 at 568.723 kb on + strand, within AZOBR_RS32090 at 568.723 kb on + strand, within AZOBR_RS32090 at 568.723 kb on + strand, within AZOBR_RS32090 at 568.724 kb on - strand, within AZOBR_RS32090 at 568.724 kb on - strand, within AZOBR_RS32090 at 568.724 kb on - strand, within AZOBR_RS32090 at 568.724 kb on - strand, within AZOBR_RS32090 at 568.801 kb on + strand, within AZOBR_RS32090 at 568.802 kb on - strand, within AZOBR_RS32090 at 568.802 kb on - strand, within AZOBR_RS32090 at 568.802 kb on - strand, within AZOBR_RS32090 at 569.113 kb on + strand, within AZOBR_RS32090 at 569.114 kb on - strand, within AZOBR_RS32090 at 569.114 kb on - strand, within AZOBR_RS32090 at 569.594 kb on + strand, within AZOBR_RS32090 at 569.595 kb on - strand, within AZOBR_RS32090 at 569.595 kb on - strand, within AZOBR_RS32090 at 569.653 kb on + strand, within AZOBR_RS32090 at 569.689 kb on + strand, within AZOBR_RS32090 at 569.689 kb on + strand, within AZOBR_RS32090 at 569.689 kb on + strand, within AZOBR_RS32090 at 569.689 kb on + strand, within AZOBR_RS32090 at 569.690 kb on - strand, within AZOBR_RS32090 at 569.690 kb on - strand, within AZOBR_RS32090 at 569.690 kb on - strand, within AZOBR_RS32090 at 569.690 kb on - strand, within AZOBR_RS32090 at 569.690 kb on - strand, within AZOBR_RS32090 at 569.690 kb on - strand, within AZOBR_RS32090 at 569.700 kb on - strand, within AZOBR_RS32090 at 570.136 kb on + strand, within AZOBR_RS32090 at 570.137 kb on - strand, within AZOBR_RS32090 at 570.137 kb on - strand, within AZOBR_RS32090 at 570.137 kb on - strand, within AZOBR_RS32090 at 570.619 kb on + strand, within AZOBR_RS32090 at 570.757 kb on + strand, within AZOBR_RS32090 at 570.763 kb on + strand, within AZOBR_RS32090 at 570.764 kb on - strand, within AZOBR_RS32090 at 571.069 kb on + strand, within AZOBR_RS32090 at 571.096 kb on - strand, within AZOBR_RS32090 at 571.243 kb on + strand, within AZOBR_RS32090 at 571.244 kb on - strand, within AZOBR_RS32090 at 571.244 kb on - strand, within AZOBR_RS32090 at 571.250 kb on - strand, within AZOBR_RS32090 at 571.250 kb on - strand, within AZOBR_RS32090 at 571.250 kb on - strand, within AZOBR_RS32090 at 571.314 kb on - strand, within AZOBR_RS32090 at 571.546 kb on + strand at 571.546 kb on + strand at 571.546 kb on + strand at 571.546 kb on + strand at 571.547 kb on - strand at 571.547 kb on - strand at 571.547 kb on - strand at 571.555 kb on + strand at 571.556 kb on - strand at 571.748 kb on - strand at 572.043 kb on + strand, within AZOBR_RS32095 at 572.043 kb on + strand, within AZOBR_RS32095 at 572.044 kb on - strand, within AZOBR_RS32095 at 572.044 kb on - strand, within AZOBR_RS32095 at 572.044 kb on - strand, within AZOBR_RS32095 at 572.272 kb on + strand, within AZOBR_RS32095 at 572.272 kb on + strand, within AZOBR_RS32095 at 572.272 kb on + strand, within AZOBR_RS32095 at 572.272 kb on + strand, within AZOBR_RS32095 at 572.273 kb on - strand, within AZOBR_RS32095 at 572.273 kb on - strand, within AZOBR_RS32095 at 572.530 kb on - strand at 572.586 kb on - strand at 572.656 kb on - strand at 572.661 kb on + strand at 572.662 kb on - strand at 572.820 kb on + strand at 572.820 kb on + strand at 572.820 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 566,141 + +0.1 566,144 + -1.7 566,145 - +0.3 566,270 + -0.1 566,271 - -1.2 566,571 - -0.5 566,571 - -0.4 566,597 + -0.9 566,597 + -0.9 566,598 - -2.1 566,698 + +0.0 566,698 + -0.5 566,698 + +0.5 566,699 - -0.3 566,699 - +2.6 567,113 + +2.5 567,114 - +0.8 567,114 - +0.3 567,241 + AZOBR_RS32090 0.12 -1.2 567,241 + AZOBR_RS32090 0.12 +0.3 567,241 + AZOBR_RS32090 0.12 -0.5 567,242 - AZOBR_RS32090 0.12 +2.1 567,468 + AZOBR_RS32090 0.16 -1.7 567,468 + AZOBR_RS32090 0.16 +0.3 567,468 + AZOBR_RS32090 0.16 +0.7 567,468 + AZOBR_RS32090 0.16 -1.1 567,469 - AZOBR_RS32090 0.16 +1.5 567,691 + AZOBR_RS32090 0.21 +0.5 567,691 + AZOBR_RS32090 0.21 +0.9 567,691 + AZOBR_RS32090 0.21 -0.7 567,692 - AZOBR_RS32090 0.21 -2.5 568,597 + AZOBR_RS32090 0.38 +0.5 568,597 + AZOBR_RS32090 0.38 +0.8 568,598 - AZOBR_RS32090 0.38 +1.2 568,598 - AZOBR_RS32090 0.38 +1.5 568,647 + AZOBR_RS32090 0.39 -0.2 568,648 - AZOBR_RS32090 0.39 -3.2 568,648 - AZOBR_RS32090 0.39 -1.0 568,648 - AZOBR_RS32090 0.39 +0.2 568,648 - AZOBR_RS32090 0.39 -2.1 568,648 - AZOBR_RS32090 0.39 +2.4 568,648 - AZOBR_RS32090 0.39 +1.0 568,648 - AZOBR_RS32090 0.39 +1.6 568,648 - AZOBR_RS32090 0.39 +0.5 568,723 + AZOBR_RS32090 0.40 -0.4 568,723 + AZOBR_RS32090 0.40 -2.0 568,723 + AZOBR_RS32090 0.40 -1.0 568,723 + AZOBR_RS32090 0.40 -4.4 568,723 + AZOBR_RS32090 0.40 -1.6 568,723 + AZOBR_RS32090 0.40 -0.3 568,723 + AZOBR_RS32090 0.40 -0.9 568,724 - AZOBR_RS32090 0.40 -1.7 568,724 - AZOBR_RS32090 0.40 +2.1 568,724 - AZOBR_RS32090 0.40 -0.2 568,724 - AZOBR_RS32090 0.40 -1.9 568,801 + AZOBR_RS32090 0.42 -2.4 568,802 - AZOBR_RS32090 0.42 -2.6 568,802 - AZOBR_RS32090 0.42 +1.2 568,802 - AZOBR_RS32090 0.42 +0.0 569,113 + AZOBR_RS32090 0.48 -0.4 569,114 - AZOBR_RS32090 0.48 +3.8 569,114 - AZOBR_RS32090 0.48 +0.1 569,594 + AZOBR_RS32090 0.57 -0.7 569,595 - AZOBR_RS32090 0.57 +0.7 569,595 - AZOBR_RS32090 0.57 -1.3 569,653 + AZOBR_RS32090 0.58 +0.7 569,689 + AZOBR_RS32090 0.59 +0.5 569,689 + AZOBR_RS32090 0.59 +0.1 569,689 + AZOBR_RS32090 0.59 +0.7 569,689 + AZOBR_RS32090 0.59 +0.6 569,690 - AZOBR_RS32090 0.59 +0.6 569,690 - AZOBR_RS32090 0.59 -0.4 569,690 - AZOBR_RS32090 0.59 -0.9 569,690 - AZOBR_RS32090 0.59 -0.5 569,690 - AZOBR_RS32090 0.59 -1.5 569,690 - AZOBR_RS32090 0.59 +0.4 569,700 - AZOBR_RS32090 0.59 -0.1 570,136 + AZOBR_RS32090 0.67 -1.1 570,137 - AZOBR_RS32090 0.67 -2.1 570,137 - AZOBR_RS32090 0.67 +0.7 570,137 - AZOBR_RS32090 0.67 -2.4 570,619 + AZOBR_RS32090 0.76 -1.9 570,757 + AZOBR_RS32090 0.79 +0.9 570,763 + AZOBR_RS32090 0.79 +1.3 570,764 - AZOBR_RS32090 0.79 +0.7 571,069 + AZOBR_RS32090 0.85 +0.4 571,096 - AZOBR_RS32090 0.86 -0.8 571,243 + AZOBR_RS32090 0.88 -1.3 571,244 - AZOBR_RS32090 0.88 -2.2 571,244 - AZOBR_RS32090 0.88 +0.5 571,250 - AZOBR_RS32090 0.89 +0.3 571,250 - AZOBR_RS32090 0.89 -0.7 571,250 - AZOBR_RS32090 0.89 -2.0 571,314 - AZOBR_RS32090 0.90 +1.1 571,546 + +1.5 571,546 + +1.0 571,546 + +1.1 571,546 + -1.2 571,547 - +0.6 571,547 - +3.4 571,547 - -1.3 571,555 + -2.3 571,556 - +1.4 571,748 - +4.7 572,043 + AZOBR_RS32095 0.36 +1.3 572,043 + AZOBR_RS32095 0.36 -0.4 572,044 - AZOBR_RS32095 0.36 -0.1 572,044 - AZOBR_RS32095 0.36 +0.9 572,044 - AZOBR_RS32095 0.36 +2.0 572,272 + AZOBR_RS32095 0.79 -0.6 572,272 + AZOBR_RS32095 0.79 -2.6 572,272 + AZOBR_RS32095 0.79 -1.2 572,272 + AZOBR_RS32095 0.79 +0.6 572,273 - AZOBR_RS32095 0.79 +2.1 572,273 - AZOBR_RS32095 0.79 -0.9 572,530 - +0.9 572,586 - -1.5 572,656 - +0.1 572,661 + -1.9 572,662 - -0.2 572,820 + -0.5 572,820 + -0.9 572,820 + +1.3
Or see this region's nucleotide sequence