Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31150 and AZOBR_RS31155 are separated by 350 nucleotides AZOBR_RS31155 and AZOBR_RS31160 are separated by 123 nucleotides
AZOBR_RS31150: AZOBR_RS31150 - putative Cold-shock DNA-binding protein (fragment), at 353,800 to 354,255
_RS31150
AZOBR_RS31155: AZOBR_RS31155 - AMP-dependent synthetase, at 354,606 to 356,309
_RS31155
AZOBR_RS31160: AZOBR_RS31160 - ADP-L-glycero-D-manno-heptose-6-epimerase, at 356,433 to 357,419
_RS31160
Position (kb) 354
355
356
357 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 353.729 kb on + strand at 353.753 kb on - strand at 354.513 kb on + strand at 354.537 kb on + strand at 354.537 kb on + strand at 354.538 kb on - strand at 354.538 kb on - strand at 354.538 kb on - strand at 354.538 kb on - strand at 354.538 kb on - strand at 354.538 kb on - strand at 354.780 kb on + strand, within AZOBR_RS31155 at 354.883 kb on - strand, within AZOBR_RS31155 at 354.883 kb on - strand, within AZOBR_RS31155 at 354.883 kb on - strand, within AZOBR_RS31155 at 354.897 kb on + strand, within AZOBR_RS31155 at 355.027 kb on - strand, within AZOBR_RS31155 at 355.027 kb on - strand, within AZOBR_RS31155 at 355.260 kb on + strand, within AZOBR_RS31155 at 355.260 kb on + strand, within AZOBR_RS31155 at 355.260 kb on + strand, within AZOBR_RS31155 at 355.261 kb on - strand, within AZOBR_RS31155 at 355.261 kb on - strand, within AZOBR_RS31155 at 355.261 kb on - strand, within AZOBR_RS31155 at 355.545 kb on + strand, within AZOBR_RS31155 at 355.546 kb on - strand, within AZOBR_RS31155 at 355.546 kb on - strand, within AZOBR_RS31155 at 355.944 kb on + strand, within AZOBR_RS31155 at 355.945 kb on - strand, within AZOBR_RS31155 at 355.945 kb on - strand, within AZOBR_RS31155 at 355.945 kb on - strand, within AZOBR_RS31155 at 355.963 kb on - strand, within AZOBR_RS31155 at 355.963 kb on - strand, within AZOBR_RS31155 at 356.046 kb on + strand, within AZOBR_RS31155 at 356.046 kb on + strand, within AZOBR_RS31155 at 356.046 kb on + strand, within AZOBR_RS31155 at 356.046 kb on + strand, within AZOBR_RS31155 at 356.121 kb on + strand, within AZOBR_RS31155 at 356.121 kb on + strand, within AZOBR_RS31155 at 356.122 kb on - strand, within AZOBR_RS31155 at 356.308 kb on - strand at 356.308 kb on - strand at 356.308 kb on - strand at 356.385 kb on + strand at 356.385 kb on + strand at 356.385 kb on + strand at 356.387 kb on + strand at 356.387 kb on + strand at 356.387 kb on + strand at 356.763 kb on + strand, within AZOBR_RS31160 at 356.763 kb on + strand, within AZOBR_RS31160 at 356.763 kb on + strand, within AZOBR_RS31160 at 356.763 kb on + strand, within AZOBR_RS31160 at 356.784 kb on + strand, within AZOBR_RS31160 at 356.859 kb on + strand, within AZOBR_RS31160 at 357.141 kb on + strand, within AZOBR_RS31160 at 357.255 kb on + strand, within AZOBR_RS31160 at 357.288 kb on + strand, within AZOBR_RS31160 at 357.294 kb on + strand, within AZOBR_RS31160 at 357.294 kb on + strand, within AZOBR_RS31160 at 357.294 kb on + strand, within AZOBR_RS31160 at 357.294 kb on + strand, within AZOBR_RS31160
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 353,729 + +1.2 353,753 - +0.8 354,513 + -2.0 354,537 + -0.9 354,537 + +1.1 354,538 - +0.2 354,538 - -0.2 354,538 - -0.2 354,538 - +0.5 354,538 - +0.5 354,538 - -0.5 354,780 + AZOBR_RS31155 0.10 +1.3 354,883 - AZOBR_RS31155 0.16 +0.3 354,883 - AZOBR_RS31155 0.16 -0.8 354,883 - AZOBR_RS31155 0.16 +1.6 354,897 + AZOBR_RS31155 0.17 +0.0 355,027 - AZOBR_RS31155 0.25 -0.9 355,027 - AZOBR_RS31155 0.25 -0.3 355,260 + AZOBR_RS31155 0.38 -1.4 355,260 + AZOBR_RS31155 0.38 +1.1 355,260 + AZOBR_RS31155 0.38 +0.1 355,261 - AZOBR_RS31155 0.38 -1.4 355,261 - AZOBR_RS31155 0.38 -3.2 355,261 - AZOBR_RS31155 0.38 +0.1 355,545 + AZOBR_RS31155 0.55 +0.6 355,546 - AZOBR_RS31155 0.55 +0.9 355,546 - AZOBR_RS31155 0.55 -2.3 355,944 + AZOBR_RS31155 0.79 -2.5 355,945 - AZOBR_RS31155 0.79 -3.1 355,945 - AZOBR_RS31155 0.79 +0.1 355,945 - AZOBR_RS31155 0.79 +0.1 355,963 - AZOBR_RS31155 0.80 +1.7 355,963 - AZOBR_RS31155 0.80 -0.1 356,046 + AZOBR_RS31155 0.85 +0.6 356,046 + AZOBR_RS31155 0.85 -1.6 356,046 + AZOBR_RS31155 0.85 -0.3 356,046 + AZOBR_RS31155 0.85 +2.6 356,121 + AZOBR_RS31155 0.89 +0.8 356,121 + AZOBR_RS31155 0.89 -0.5 356,122 - AZOBR_RS31155 0.89 -2.4 356,308 - -0.5 356,308 - -1.9 356,308 - -1.8 356,385 + -2.4 356,385 + -0.9 356,385 + -1.4 356,387 + +0.8 356,387 + +0.5 356,387 + -0.2 356,763 + AZOBR_RS31160 0.33 +0.8 356,763 + AZOBR_RS31160 0.33 -1.7 356,763 + AZOBR_RS31160 0.33 -0.4 356,763 + AZOBR_RS31160 0.33 -2.7 356,784 + AZOBR_RS31160 0.36 +0.2 356,859 + AZOBR_RS31160 0.43 +0.1 357,141 + AZOBR_RS31160 0.72 -0.5 357,255 + AZOBR_RS31160 0.83 -1.2 357,288 + AZOBR_RS31160 0.87 +2.2 357,294 + AZOBR_RS31160 0.87 -1.4 357,294 + AZOBR_RS31160 0.87 -0.4 357,294 + AZOBR_RS31160 0.87 +1.1 357,294 + AZOBR_RS31160 0.87 -0.6
Or see this region's nucleotide sequence