Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS27950 and AZOBR_RS27955 are separated by 131 nucleotides AZOBR_RS27955 and AZOBR_RS27960 overlap by 4 nucleotides
AZOBR_RS27950: AZOBR_RS27950 - transcriptional regulator, at 440,933 to 442,111
_RS27950
AZOBR_RS27955: AZOBR_RS27955 - glycoside hydrolase family 43, at 442,243 to 443,313
_RS27955
AZOBR_RS27960: AZOBR_RS27960 - multidrug ABC transporter ATP-binding protein, at 443,310 to 446,057
_RS27960
Position (kb) 442
443
444 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 441.728 kb on + strand, within AZOBR_RS27950 at 441.729 kb on - strand, within AZOBR_RS27950 at 441.729 kb on - strand, within AZOBR_RS27950 at 442.109 kb on + strand at 442.109 kb on + strand at 442.109 kb on + strand at 442.195 kb on - strand at 442.316 kb on + strand at 442.993 kb on + strand, within AZOBR_RS27955 at 442.993 kb on + strand, within AZOBR_RS27955 at 442.993 kb on + strand, within AZOBR_RS27955 at 442.994 kb on - strand, within AZOBR_RS27955 at 442.994 kb on - strand, within AZOBR_RS27955 at 442.994 kb on - strand, within AZOBR_RS27955 at 442.994 kb on - strand, within AZOBR_RS27955 at 442.994 kb on - strand, within AZOBR_RS27955 at 443.080 kb on + strand, within AZOBR_RS27955 at 443.080 kb on + strand, within AZOBR_RS27955 at 443.080 kb on + strand, within AZOBR_RS27955 at 443.215 kb on + strand at 443.254 kb on + strand at 443.254 kb on + strand at 443.255 kb on - strand at 443.255 kb on - strand at 443.376 kb on + strand at 443.376 kb on + strand at 443.377 kb on - strand at 443.583 kb on + strand at 443.583 kb on + strand at 443.584 kb on - strand at 443.584 kb on - strand at 443.584 kb on - strand at 443.935 kb on - strand, within AZOBR_RS27960
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 441,728 + AZOBR_RS27950 0.67 -0.7 441,729 - AZOBR_RS27950 0.68 +1.4 441,729 - AZOBR_RS27950 0.68 -0.7 442,109 + -1.5 442,109 + +1.6 442,109 + -0.0 442,195 - +0.9 442,316 + +0.6 442,993 + AZOBR_RS27955 0.70 -1.2 442,993 + AZOBR_RS27955 0.70 +0.2 442,993 + AZOBR_RS27955 0.70 -0.7 442,994 - AZOBR_RS27955 0.70 +0.0 442,994 - AZOBR_RS27955 0.70 +0.6 442,994 - AZOBR_RS27955 0.70 -1.7 442,994 - AZOBR_RS27955 0.70 +0.1 442,994 - AZOBR_RS27955 0.70 -0.9 443,080 + AZOBR_RS27955 0.78 -1.4 443,080 + AZOBR_RS27955 0.78 +2.4 443,080 + AZOBR_RS27955 0.78 -0.8 443,215 + -3.7 443,254 + +0.7 443,254 + -0.1 443,255 - +3.0 443,255 - +0.4 443,376 + -0.5 443,376 + +0.6 443,377 - +0.3 443,583 + -0.4 443,583 + +1.6 443,584 - -2.7 443,584 - +0.3 443,584 - -2.8 443,935 - AZOBR_RS27960 0.23 -1.5
Or see this region's nucleotide sequence