Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS23560

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS23555 and AZOBR_RS23560 are separated by 107 nucleotidesAZOBR_RS23560 and AZOBR_RS23565 overlap by 4 nucleotides AZOBR_RS23555: AZOBR_RS23555 - beta-lactamase, at 315,105 to 315,995 _RS23555 AZOBR_RS23560: AZOBR_RS23560 - LysR family transcriptional regulator, at 316,103 to 316,978 _RS23560 AZOBR_RS23565: AZOBR_RS23565 - D-threo-aldose 1-dehydrogenase, at 316,975 to 317,925 _RS23565 Position (kb) 316 317Strain fitness (log2 ratio) -2 -1 0 1 2at 315.193 kb on + strandat 315.193 kb on + strandat 315.193 kb on + strandat 315.194 kb on - strand, within AZOBR_RS23555at 315.201 kb on - strand, within AZOBR_RS23555at 315.667 kb on + strand, within AZOBR_RS23555at 316.065 kb on + strandat 316.886 kb on + strand, within AZOBR_RS23560at 316.976 kb on + strandat 316.977 kb on - strandat 317.273 kb on + strand, within AZOBR_RS23565at 317.273 kb on + strand, within AZOBR_RS23565at 317.273 kb on + strand, within AZOBR_RS23565at 317.274 kb on - strand, within AZOBR_RS23565at 317.274 kb on - strand, within AZOBR_RS23565at 317.274 kb on - strand, within AZOBR_RS23565at 317.358 kb on - strand, within AZOBR_RS23565at 317.561 kb on + strand, within AZOBR_RS23565at 317.636 kb on + strand, within AZOBR_RS23565at 317.637 kb on - strand, within AZOBR_RS23565at 317.637 kb on - strand, within AZOBR_RS23565at 317.637 kb on - strand, within AZOBR_RS23565at 317.642 kb on + strand, within AZOBR_RS23565at 317.642 kb on + strand, within AZOBR_RS23565

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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315,193 + +0.1
315,193 + +1.4
315,193 + +0.2
315,194 - AZOBR_RS23555 0.10 -0.7
315,201 - AZOBR_RS23555 0.11 -0.4
315,667 + AZOBR_RS23555 0.63 -1.1
316,065 + +2.0
316,886 + AZOBR_RS23560 0.89 -0.9
316,976 + -0.5
316,977 - -2.1
317,273 + AZOBR_RS23565 0.31 -2.2
317,273 + AZOBR_RS23565 0.31 -2.0
317,273 + AZOBR_RS23565 0.31 +0.5
317,274 - AZOBR_RS23565 0.31 -0.9
317,274 - AZOBR_RS23565 0.31 -1.9
317,274 - AZOBR_RS23565 0.31 -1.8
317,358 - AZOBR_RS23565 0.40 +0.9
317,561 + AZOBR_RS23565 0.62 +0.5
317,636 + AZOBR_RS23565 0.70 +2.2
317,637 - AZOBR_RS23565 0.70 +0.1
317,637 - AZOBR_RS23565 0.70 -0.8
317,637 - AZOBR_RS23565 0.70 +0.8
317,642 + AZOBR_RS23565 0.70 +0.9
317,642 + AZOBR_RS23565 0.70 +0.2

Or see this region's nucleotide sequence