Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23300 and AZOBR_RS23305 are separated by 200 nucleotides AZOBR_RS23305 and AZOBR_RS23310 are separated by 35 nucleotides
AZOBR_RS23300: AZOBR_RS23300 - dihydrodipicolinate synthase, at 253,271 to 254,185
_RS23300
AZOBR_RS23305: AZOBR_RS23305 - hypothetical protein, at 254,386 to 255,366
_RS23305
AZOBR_RS23310: AZOBR_RS23310 - hypothetical protein, at 255,402 to 256,379
_RS23310
Position (kb) 254
255
256 Strain fitness (log2 ratio) -2
-1
0
1
2 at 253.603 kb on - strand, within AZOBR_RS23300 at 253.755 kb on + strand, within AZOBR_RS23300 at 253.755 kb on + strand, within AZOBR_RS23300 at 253.776 kb on + strand, within AZOBR_RS23300 at 253.777 kb on - strand, within AZOBR_RS23300 at 253.777 kb on - strand, within AZOBR_RS23300 at 253.777 kb on - strand, within AZOBR_RS23300 at 253.777 kb on - strand, within AZOBR_RS23300 at 253.777 kb on - strand, within AZOBR_RS23300 at 253.857 kb on + strand, within AZOBR_RS23300 at 253.857 kb on + strand, within AZOBR_RS23300 at 253.857 kb on + strand, within AZOBR_RS23300 at 254.531 kb on - strand, within AZOBR_RS23305 at 254.531 kb on - strand, within AZOBR_RS23305 at 254.632 kb on + strand, within AZOBR_RS23305 at 254.632 kb on + strand, within AZOBR_RS23305 at 254.632 kb on + strand, within AZOBR_RS23305 at 254.632 kb on + strand, within AZOBR_RS23305 at 254.632 kb on + strand, within AZOBR_RS23305 at 254.633 kb on - strand, within AZOBR_RS23305 at 254.633 kb on - strand, within AZOBR_RS23305 at 254.634 kb on + strand, within AZOBR_RS23305 at 254.634 kb on + strand, within AZOBR_RS23305 at 254.634 kb on + strand, within AZOBR_RS23305 at 254.634 kb on + strand, within AZOBR_RS23305 at 254.635 kb on - strand, within AZOBR_RS23305 at 254.690 kb on - strand, within AZOBR_RS23305 at 254.690 kb on - strand, within AZOBR_RS23305 at 254.728 kb on + strand, within AZOBR_RS23305 at 254.728 kb on + strand, within AZOBR_RS23305 at 254.729 kb on - strand, within AZOBR_RS23305 at 254.729 kb on - strand, within AZOBR_RS23305 at 255.092 kb on - strand, within AZOBR_RS23305 at 255.134 kb on - strand, within AZOBR_RS23305 at 255.355 kb on + strand at 255.356 kb on - strand at 255.364 kb on + strand at 255.364 kb on + strand at 255.364 kb on + strand at 255.364 kb on + strand at 255.364 kb on + strand at 255.364 kb on + strand at 255.364 kb on + strand at 255.364 kb on + strand at 255.364 kb on + strand at 255.368 kb on + strand at 255.369 kb on - strand at 255.703 kb on - strand, within AZOBR_RS23310 at 255.703 kb on - strand, within AZOBR_RS23310 at 256.252 kb on - strand, within AZOBR_RS23310 at 256.252 kb on - strand, within AZOBR_RS23310 at 256.291 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 253,603 - AZOBR_RS23300 0.36 +0.0 253,755 + AZOBR_RS23300 0.53 -1.8 253,755 + AZOBR_RS23300 0.53 +1.0 253,776 + AZOBR_RS23300 0.55 +1.1 253,777 - AZOBR_RS23300 0.55 +0.3 253,777 - AZOBR_RS23300 0.55 +0.3 253,777 - AZOBR_RS23300 0.55 -0.9 253,777 - AZOBR_RS23300 0.55 -0.3 253,777 - AZOBR_RS23300 0.55 -0.8 253,857 + AZOBR_RS23300 0.64 +2.1 253,857 + AZOBR_RS23300 0.64 +0.6 253,857 + AZOBR_RS23300 0.64 -0.4 254,531 - AZOBR_RS23305 0.15 -1.1 254,531 - AZOBR_RS23305 0.15 -1.9 254,632 + AZOBR_RS23305 0.25 -2.0 254,632 + AZOBR_RS23305 0.25 +0.6 254,632 + AZOBR_RS23305 0.25 +0.7 254,632 + AZOBR_RS23305 0.25 +2.4 254,632 + AZOBR_RS23305 0.25 +0.9 254,633 - AZOBR_RS23305 0.25 -0.0 254,633 - AZOBR_RS23305 0.25 +1.4 254,634 + AZOBR_RS23305 0.25 -1.8 254,634 + AZOBR_RS23305 0.25 +0.5 254,634 + AZOBR_RS23305 0.25 +1.6 254,634 + AZOBR_RS23305 0.25 -0.1 254,635 - AZOBR_RS23305 0.25 +0.5 254,690 - AZOBR_RS23305 0.31 -0.6 254,690 - AZOBR_RS23305 0.31 +1.7 254,728 + AZOBR_RS23305 0.35 +0.1 254,728 + AZOBR_RS23305 0.35 +1.3 254,729 - AZOBR_RS23305 0.35 -2.1 254,729 - AZOBR_RS23305 0.35 -2.6 255,092 - AZOBR_RS23305 0.72 +1.0 255,134 - AZOBR_RS23305 0.76 +0.6 255,355 + +1.2 255,356 - -2.0 255,364 + -1.3 255,364 + -0.7 255,364 + +0.4 255,364 + -1.7 255,364 + +1.0 255,364 + -0.1 255,364 + -0.0 255,364 + +0.3 255,364 + +0.7 255,368 + +1.2 255,369 - -0.7 255,703 - AZOBR_RS23310 0.31 +1.2 255,703 - AZOBR_RS23310 0.31 -0.5 256,252 - AZOBR_RS23310 0.87 -1.4 256,252 - AZOBR_RS23310 0.87 +2.2 256,291 - +0.1
Or see this region's nucleotide sequence