Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23130 and AZOBR_RS23135 overlap by 4 nucleotides AZOBR_RS23135 and AZOBR_RS23140 are separated by 94 nucleotides AZOBR_RS23140 and AZOBR_RS23145 are separated by 205 nucleotides
AZOBR_RS23130: AZOBR_RS23130 - cytochrome C, at 205,510 to 205,992
_RS23130
AZOBR_RS23135: AZOBR_RS23135 - cytochrome C, at 205,989 to 206,675
_RS23135
AZOBR_RS23140: AZOBR_RS23140 - transcriptional regulator, at 206,770 to 207,054
_RS23140
AZOBR_RS23145: AZOBR_RS23145 - hypothetical protein, at 207,260 to 207,613
_RS23145
Position (kb) 205
206
207 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 205.036 kb on + strand at 205.036 kb on + strand at 205.037 kb on - strand at 205.037 kb on - strand at 205.037 kb on - strand at 205.109 kb on - strand at 205.219 kb on + strand at 205.219 kb on + strand at 205.220 kb on - strand at 205.220 kb on - strand at 205.220 kb on - strand at 205.247 kb on - strand at 205.247 kb on - strand at 205.247 kb on - strand at 205.693 kb on + strand, within AZOBR_RS23130 at 205.694 kb on - strand, within AZOBR_RS23130 at 205.829 kb on - strand, within AZOBR_RS23130 at 206.493 kb on + strand, within AZOBR_RS23135 at 206.494 kb on - strand, within AZOBR_RS23135 at 207.060 kb on - strand at 207.226 kb on + strand at 207.638 kb on + strand at 207.638 kb on + strand at 207.638 kb on + strand at 207.653 kb on + strand at 207.654 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 205,036 + -0.7 205,036 + -2.0 205,037 - +0.4 205,037 - -0.3 205,037 - -0.4 205,109 - -0.7 205,219 + +0.6 205,219 + +0.3 205,220 - -0.1 205,220 - -0.7 205,220 - -0.1 205,247 - +0.5 205,247 - +0.9 205,247 - +0.5 205,693 + AZOBR_RS23130 0.38 +0.3 205,694 - AZOBR_RS23130 0.38 +0.9 205,829 - AZOBR_RS23130 0.66 +0.4 206,493 + AZOBR_RS23135 0.73 -2.5 206,494 - AZOBR_RS23135 0.74 -3.3 207,060 - -2.6 207,226 + +0.5 207,638 + -0.4 207,638 + +0.1 207,638 + -0.2 207,653 + +1.0 207,654 - +0.2
Or see this region's nucleotide sequence