Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS23025

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS23020 and AZOBR_RS23025 are separated by 11 nucleotidesAZOBR_RS23025 and AZOBR_RS23030 overlap by 1 nucleotides AZOBR_RS23020: AZOBR_RS23020 - ABC transporter permease, at 179,049 to 180,029 _RS23020 AZOBR_RS23025: AZOBR_RS23025 - ABC transporter permease, at 180,041 to 180,898 _RS23025 AZOBR_RS23030: AZOBR_RS23030 - ABC transporter ATP-binding protein, at 180,898 to 182,562 _RS23030 Position (kb) 180 181Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 179.066 kb on - strandat 179.066 kb on - strandat 179.066 kb on - strandat 179.247 kb on + strand, within AZOBR_RS23020at 179.248 kb on - strand, within AZOBR_RS23020at 179.265 kb on + strand, within AZOBR_RS23020at 179.265 kb on + strand, within AZOBR_RS23020at 179.265 kb on + strand, within AZOBR_RS23020at 179.265 kb on + strand, within AZOBR_RS23020at 179.266 kb on - strand, within AZOBR_RS23020at 179.266 kb on - strand, within AZOBR_RS23020at 179.266 kb on - strand, within AZOBR_RS23020at 179.266 kb on - strand, within AZOBR_RS23020at 179.266 kb on - strand, within AZOBR_RS23020at 179.266 kb on - strand, within AZOBR_RS23020at 179.299 kb on - strand, within AZOBR_RS23020at 179.299 kb on - strand, within AZOBR_RS23020at 179.304 kb on + strand, within AZOBR_RS23020at 179.584 kb on - strand, within AZOBR_RS23020at 179.655 kb on + strand, within AZOBR_RS23020at 179.655 kb on + strand, within AZOBR_RS23020at 179.656 kb on - strand, within AZOBR_RS23020at 179.656 kb on - strand, within AZOBR_RS23020at 179.656 kb on - strand, within AZOBR_RS23020at 179.656 kb on - strand, within AZOBR_RS23020at 179.667 kb on + strand, within AZOBR_RS23020at 179.667 kb on + strand, within AZOBR_RS23020at 179.668 kb on - strandat 179.917 kb on - strand, within AZOBR_RS23020at 179.917 kb on - strand, within AZOBR_RS23020at 179.992 kb on - strandat 179.992 kb on - strandat 179.992 kb on - strandat 179.992 kb on - strandat 180.740 kb on + strand, within AZOBR_RS23025at 180.740 kb on + strand, within AZOBR_RS23025at 180.740 kb on + strand, within AZOBR_RS23025at 180.740 kb on + strand, within AZOBR_RS23025at 180.741 kb on - strand, within AZOBR_RS23025at 180.741 kb on - strand, within AZOBR_RS23025at 180.741 kb on - strand, within AZOBR_RS23025at 181.259 kb on - strand, within AZOBR_RS23030at 181.651 kb on + strand, within AZOBR_RS23030at 181.652 kb on - strand, within AZOBR_RS23030at 181.652 kb on - strand, within AZOBR_RS23030

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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179,066 - -2.6
179,066 - -0.2
179,066 - +1.3
179,247 + AZOBR_RS23020 0.20 +0.8
179,248 - AZOBR_RS23020 0.20 +0.5
179,265 + AZOBR_RS23020 0.22 -0.2
179,265 + AZOBR_RS23020 0.22 +2.5
179,265 + AZOBR_RS23020 0.22 -0.6
179,265 + AZOBR_RS23020 0.22 -2.2
179,266 - AZOBR_RS23020 0.22 +1.1
179,266 - AZOBR_RS23020 0.22 -1.0
179,266 - AZOBR_RS23020 0.22 -0.7
179,266 - AZOBR_RS23020 0.22 +0.0
179,266 - AZOBR_RS23020 0.22 -2.7
179,266 - AZOBR_RS23020 0.22 +0.5
179,299 - AZOBR_RS23020 0.25 -0.3
179,299 - AZOBR_RS23020 0.25 -1.0
179,304 + AZOBR_RS23020 0.26 -0.4
179,584 - AZOBR_RS23020 0.55 -1.0
179,655 + AZOBR_RS23020 0.62 +0.2
179,655 + AZOBR_RS23020 0.62 +0.1
179,656 - AZOBR_RS23020 0.62 +0.6
179,656 - AZOBR_RS23020 0.62 +4.0
179,656 - AZOBR_RS23020 0.62 +0.5
179,656 - AZOBR_RS23020 0.62 +1.0
179,667 + AZOBR_RS23020 0.63 -0.8
179,667 + AZOBR_RS23020 0.63 +0.1
179,668 - +2.1
179,917 - AZOBR_RS23020 0.88 -1.2
179,917 - AZOBR_RS23020 0.88 +1.3
179,992 - +1.2
179,992 - +0.6
179,992 - +0.4
179,992 - +0.6
180,740 + AZOBR_RS23025 0.81 -0.5
180,740 + AZOBR_RS23025 0.81 +0.2
180,740 + AZOBR_RS23025 0.81 +2.3
180,740 + AZOBR_RS23025 0.81 -0.7
180,741 - AZOBR_RS23025 0.82 +0.7
180,741 - AZOBR_RS23025 0.82 +1.8
180,741 - AZOBR_RS23025 0.82 +1.7
181,259 - AZOBR_RS23030 0.22 -0.0
181,651 + AZOBR_RS23030 0.45 +0.0
181,652 - AZOBR_RS23030 0.45 +1.6
181,652 - AZOBR_RS23030 0.45 +0.5

Or see this region's nucleotide sequence