Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS17965

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS17955 and AZOBR_RS17960 overlap by 13 nucleotidesAZOBR_RS17960 and AZOBR_RS17965 are separated by 169 nucleotidesAZOBR_RS17965 and AZOBR_RS17970 are separated by 171 nucleotides AZOBR_RS17955: AZOBR_RS17955 - amino acid ABC transporter substrate-binding protein, at 786,480 to 787,385 _RS17955 AZOBR_RS17960: AZOBR_RS17960 - iron-hydroxamate transporter ATP-binding protein, at 787,373 to 788,164 _RS17960 AZOBR_RS17965: AZOBR_RS17965 - ferrichrome receptor, at 788,334 to 790,487 _RS17965 AZOBR_RS17970: AZOBR_RS17970 - AraC family transcriptional regulator, at 790,659 to 791,543 _RS17970 Position (kb) 788 789 790 791Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 787.437 kb on + strandat 787.437 kb on + strandat 787.437 kb on + strandat 787.438 kb on - strandat 787.438 kb on - strandat 787.438 kb on - strandat 787.438 kb on - strandat 787.873 kb on + strand, within AZOBR_RS17960at 787.873 kb on + strand, within AZOBR_RS17960at 787.874 kb on - strand, within AZOBR_RS17960at 787.905 kb on + strand, within AZOBR_RS17960at 787.905 kb on + strand, within AZOBR_RS17960at 787.905 kb on + strand, within AZOBR_RS17960at 787.906 kb on - strand, within AZOBR_RS17960at 787.906 kb on - strand, within AZOBR_RS17960at 787.906 kb on - strand, within AZOBR_RS17960at 787.906 kb on - strand, within AZOBR_RS17960at 788.052 kb on + strand, within AZOBR_RS17960at 788.053 kb on - strand, within AZOBR_RS17960at 788.053 kb on - strand, within AZOBR_RS17960at 788.053 kb on - strand, within AZOBR_RS17960at 788.053 kb on - strand, within AZOBR_RS17960at 788.136 kb on + strandat 788.136 kb on + strandat 788.137 kb on - strandat 788.137 kb on - strandat 788.178 kb on + strandat 788.178 kb on + strandat 788.178 kb on + strandat 788.178 kb on + strandat 788.178 kb on + strandat 788.179 kb on - strandat 788.179 kb on - strandat 788.179 kb on - strandat 788.179 kb on - strandat 788.179 kb on - strandat 788.179 kb on - strandat 788.179 kb on - strandat 788.179 kb on - strandat 788.179 kb on - strandat 788.179 kb on - strandat 788.179 kb on - strandat 788.179 kb on - strandat 788.179 kb on - strandat 788.180 kb on + strandat 788.180 kb on + strandat 788.180 kb on + strandat 788.181 kb on - strandat 788.181 kb on - strandat 788.181 kb on - strandat 788.190 kb on + strandat 788.190 kb on + strandat 788.190 kb on + strandat 788.190 kb on + strandat 788.191 kb on - strandat 788.191 kb on - strandat 788.191 kb on - strandat 788.191 kb on - strandat 788.191 kb on - strandat 788.191 kb on - strandat 788.191 kb on - strandat 788.191 kb on - strandat 788.191 kb on - strandat 788.191 kb on - strandat 788.191 kb on - strandat 788.192 kb on + strandat 788.192 kb on + strandat 788.193 kb on - strandat 788.193 kb on - strandat 788.416 kb on + strandat 788.551 kb on + strand, within AZOBR_RS17965at 788.605 kb on + strand, within AZOBR_RS17965at 788.606 kb on - strand, within AZOBR_RS17965at 788.644 kb on + strand, within AZOBR_RS17965at 788.644 kb on + strand, within AZOBR_RS17965at 788.645 kb on - strand, within AZOBR_RS17965at 788.645 kb on - strand, within AZOBR_RS17965at 788.882 kb on - strand, within AZOBR_RS17965at 788.983 kb on + strand, within AZOBR_RS17965at 788.984 kb on - strand, within AZOBR_RS17965at 789.010 kb on + strand, within AZOBR_RS17965at 789.011 kb on - strand, within AZOBR_RS17965at 789.011 kb on - strand, within AZOBR_RS17965at 789.011 kb on - strand, within AZOBR_RS17965at 789.152 kb on - strand, within AZOBR_RS17965at 789.190 kb on + strand, within AZOBR_RS17965at 789.190 kb on + strand, within AZOBR_RS17965at 789.190 kb on + strand, within AZOBR_RS17965at 789.190 kb on + strand, within AZOBR_RS17965at 789.191 kb on - strand, within AZOBR_RS17965at 789.191 kb on - strand, within AZOBR_RS17965at 789.286 kb on + strand, within AZOBR_RS17965at 789.286 kb on + strand, within AZOBR_RS17965at 789.286 kb on + strand, within AZOBR_RS17965at 789.286 kb on + strand, within AZOBR_RS17965at 789.287 kb on - strand, within AZOBR_RS17965at 789.287 kb on - strand, within AZOBR_RS17965at 789.287 kb on - strand, within AZOBR_RS17965at 789.292 kb on + strand, within AZOBR_RS17965at 789.292 kb on + strand, within AZOBR_RS17965at 789.293 kb on - strand, within AZOBR_RS17965at 789.293 kb on - strand, within AZOBR_RS17965at 789.463 kb on + strand, within AZOBR_RS17965at 789.464 kb on - strand, within AZOBR_RS17965at 789.490 kb on + strand, within AZOBR_RS17965at 789.577 kb on + strand, within AZOBR_RS17965at 789.578 kb on - strand, within AZOBR_RS17965at 789.578 kb on - strand, within AZOBR_RS17965at 789.700 kb on + strand, within AZOBR_RS17965at 789.701 kb on - strand, within AZOBR_RS17965at 789.793 kb on + strand, within AZOBR_RS17965at 789.793 kb on + strand, within AZOBR_RS17965at 789.794 kb on - strand, within AZOBR_RS17965at 789.830 kb on - strand, within AZOBR_RS17965at 789.946 kb on + strandat 789.946 kb on + strand, within AZOBR_RS17965at 789.946 kb on + strand, within AZOBR_RS17965at 789.946 kb on + strand, within AZOBR_RS17965at 789.947 kb on - strand, within AZOBR_RS17965at 789.947 kb on - strand, within AZOBR_RS17965at 789.947 kb on - strand, within AZOBR_RS17965at 789.979 kb on + strand, within AZOBR_RS17965at 789.980 kb on - strand, within AZOBR_RS17965at 789.980 kb on - strand, within AZOBR_RS17965at 789.980 kb on - strand, within AZOBR_RS17965at 789.980 kb on - strand, within AZOBR_RS17965at 790.027 kb on + strand, within AZOBR_RS17965at 790.027 kb on + strand, within AZOBR_RS17965at 790.028 kb on - strand, within AZOBR_RS17965at 790.028 kb on - strand, within AZOBR_RS17965at 790.028 kb on - strand, within AZOBR_RS17965at 790.028 kb on - strand, within AZOBR_RS17965at 790.057 kb on + strand, within AZOBR_RS17965at 790.057 kb on + strand, within AZOBR_RS17965at 790.058 kb on - strand, within AZOBR_RS17965at 790.064 kb on - strand, within AZOBR_RS17965at 790.064 kb on - strand, within AZOBR_RS17965at 790.084 kb on + strand, within AZOBR_RS17965at 790.309 kb on + strandat 790.310 kb on - strandat 790.478 kb on + strandat 790.478 kb on + strandat 790.507 kb on + strandat 790.507 kb on + strandat 790.951 kb on + strand, within AZOBR_RS17970at 790.952 kb on - strand, within AZOBR_RS17970at 790.952 kb on - strand, within AZOBR_RS17970at 790.952 kb on - strand, within AZOBR_RS17970at 791.062 kb on + strand, within AZOBR_RS17970at 791.062 kb on + strand, within AZOBR_RS17970at 791.287 kb on + strand, within AZOBR_RS17970at 791.287 kb on + strand, within AZOBR_RS17970at 791.287 kb on + strand, within AZOBR_RS17970at 791.288 kb on - strand, within AZOBR_RS17970at 791.288 kb on - strand, within AZOBR_RS17970at 791.288 kb on - strand, within AZOBR_RS17970at 791.288 kb on - strand, within AZOBR_RS17970at 791.288 kb on - strand, within AZOBR_RS17970at 791.288 kb on - strand, within AZOBR_RS17970at 791.288 kb on - strand, within AZOBR_RS17970at 791.288 kb on - strand, within AZOBR_RS17970at 791.410 kb on + strand, within AZOBR_RS17970at 791.410 kb on + strand, within AZOBR_RS17970at 791.410 kb on + strand, within AZOBR_RS17970at 791.410 kb on + strand, within AZOBR_RS17970at 791.410 kb on + strand, within AZOBR_RS17970at 791.410 kb on + strand, within AZOBR_RS17970at 791.410 kb on + strand, within AZOBR_RS17970at 791.410 kb on + strand, within AZOBR_RS17970at 791.411 kb on - strand, within AZOBR_RS17970at 791.411 kb on - strand, within AZOBR_RS17970

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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787,437 + +0.9
787,437 + +1.9
787,437 + +0.7
787,438 - +0.4
787,438 - +1.4
787,438 - -0.1
787,438 - -0.6
787,873 + AZOBR_RS17960 0.63 -1.7
787,873 + AZOBR_RS17960 0.63 -1.8
787,874 - AZOBR_RS17960 0.63 -0.2
787,905 + AZOBR_RS17960 0.67 +0.5
787,905 + AZOBR_RS17960 0.67 -0.5
787,905 + AZOBR_RS17960 0.67 -0.9
787,906 - AZOBR_RS17960 0.67 -0.4
787,906 - AZOBR_RS17960 0.67 -1.0
787,906 - AZOBR_RS17960 0.67 -1.0
787,906 - AZOBR_RS17960 0.67 +0.0
788,052 + AZOBR_RS17960 0.86 -0.2
788,053 - AZOBR_RS17960 0.86 +1.0
788,053 - AZOBR_RS17960 0.86 -1.1
788,053 - AZOBR_RS17960 0.86 -1.8
788,053 - AZOBR_RS17960 0.86 -0.1
788,136 + +0.5
788,136 + +0.8
788,137 - -0.7
788,137 - +0.3
788,178 + +0.6
788,178 + -0.4
788,178 + +0.9
788,178 + +0.1
788,178 + -0.5
788,179 - +0.3
788,179 - -1.6
788,179 - -0.8
788,179 - -0.1
788,179 - -1.3
788,179 - +1.4
788,179 - +0.2
788,179 - -0.6
788,179 - -0.6
788,179 - +1.8
788,179 - -0.9
788,179 - -0.8
788,179 - -1.4
788,180 + -0.6
788,180 + -0.1
788,180 + +1.8
788,181 - +0.1
788,181 - -2.4
788,181 - -0.8
788,190 + -0.4
788,190 + -0.1
788,190 + -1.5
788,190 + +0.1
788,191 - -0.2
788,191 - -0.6
788,191 - +2.2
788,191 - -0.3
788,191 - +1.3
788,191 - +0.3
788,191 - +0.3
788,191 - -0.3
788,191 - -2.8
788,191 - +1.3
788,191 - -2.0
788,192 + +0.1
788,192 + +0.6
788,193 - -0.1
788,193 - -1.8
788,416 + +0.8
788,551 + AZOBR_RS17965 0.10 +0.5
788,605 + AZOBR_RS17965 0.13 +1.2
788,606 - AZOBR_RS17965 0.13 +0.9
788,644 + AZOBR_RS17965 0.14 +0.1
788,644 + AZOBR_RS17965 0.14 +0.4
788,645 - AZOBR_RS17965 0.14 -0.2
788,645 - AZOBR_RS17965 0.14 -0.4
788,882 - AZOBR_RS17965 0.25 -1.2
788,983 + AZOBR_RS17965 0.30 -2.2
788,984 - AZOBR_RS17965 0.30 +0.8
789,010 + AZOBR_RS17965 0.31 +0.4
789,011 - AZOBR_RS17965 0.31 +0.8
789,011 - AZOBR_RS17965 0.31 -0.7
789,011 - AZOBR_RS17965 0.31 +0.9
789,152 - AZOBR_RS17965 0.38 -0.8
789,190 + AZOBR_RS17965 0.40 -0.8
789,190 + AZOBR_RS17965 0.40 +0.5
789,190 + AZOBR_RS17965 0.40 -0.8
789,190 + AZOBR_RS17965 0.40 +0.4
789,191 - AZOBR_RS17965 0.40 +1.2
789,191 - AZOBR_RS17965 0.40 +1.0
789,286 + AZOBR_RS17965 0.44 +1.2
789,286 + AZOBR_RS17965 0.44 -4.6
789,286 + AZOBR_RS17965 0.44 -0.6
789,286 + AZOBR_RS17965 0.44 -0.6
789,287 - AZOBR_RS17965 0.44 -1.2
789,287 - AZOBR_RS17965 0.44 -2.6
789,287 - AZOBR_RS17965 0.44 +0.1
789,292 + AZOBR_RS17965 0.44 -0.4
789,292 + AZOBR_RS17965 0.44 +2.2
789,293 - AZOBR_RS17965 0.45 +0.8
789,293 - AZOBR_RS17965 0.45 -2.0
789,463 + AZOBR_RS17965 0.52 -2.2
789,464 - AZOBR_RS17965 0.52 -0.6
789,490 + AZOBR_RS17965 0.54 +0.0
789,577 + AZOBR_RS17965 0.58 -1.3
789,578 - AZOBR_RS17965 0.58 -0.5
789,578 - AZOBR_RS17965 0.58 -1.5
789,700 + AZOBR_RS17965 0.63 -0.7
789,701 - AZOBR_RS17965 0.63 -2.2
789,793 + AZOBR_RS17965 0.68 -0.4
789,793 + AZOBR_RS17965 0.68 +0.1
789,794 - AZOBR_RS17965 0.68 +2.4
789,830 - AZOBR_RS17965 0.69 -0.9
789,946 + +2.0
789,946 + AZOBR_RS17965 0.75 +0.2
789,946 + AZOBR_RS17965 0.75 +1.6
789,946 + AZOBR_RS17965 0.75 -1.3
789,947 - AZOBR_RS17965 0.75 +0.6
789,947 - AZOBR_RS17965 0.75 -1.3
789,947 - AZOBR_RS17965 0.75 -0.5
789,979 + AZOBR_RS17965 0.76 -1.9
789,980 - AZOBR_RS17965 0.76 -0.8
789,980 - AZOBR_RS17965 0.76 -0.9
789,980 - AZOBR_RS17965 0.76 +1.6
789,980 - AZOBR_RS17965 0.76 +0.3
790,027 + AZOBR_RS17965 0.79 -1.6
790,027 + AZOBR_RS17965 0.79 -1.5
790,028 - AZOBR_RS17965 0.79 -0.0
790,028 - AZOBR_RS17965 0.79 -0.3
790,028 - AZOBR_RS17965 0.79 -1.9
790,028 - AZOBR_RS17965 0.79 +0.0
790,057 + AZOBR_RS17965 0.80 -0.1
790,057 + AZOBR_RS17965 0.80 -3.6
790,058 - AZOBR_RS17965 0.80 +2.0
790,064 - AZOBR_RS17965 0.80 -1.9
790,064 - AZOBR_RS17965 0.80 +2.6
790,084 + AZOBR_RS17965 0.81 +1.2
790,309 + +0.0
790,310 - -0.4
790,478 + -1.3
790,478 + -0.6
790,507 + -0.3
790,507 + +0.2
790,951 + AZOBR_RS17970 0.33 +0.0
790,952 - AZOBR_RS17970 0.33 -1.3
790,952 - AZOBR_RS17970 0.33 -0.6
790,952 - AZOBR_RS17970 0.33 +1.6
791,062 + AZOBR_RS17970 0.46 -0.1
791,062 + AZOBR_RS17970 0.46 +0.1
791,287 + AZOBR_RS17970 0.71 +0.0
791,287 + AZOBR_RS17970 0.71 -1.0
791,287 + AZOBR_RS17970 0.71 +0.1
791,288 - AZOBR_RS17970 0.71 -1.3
791,288 - AZOBR_RS17970 0.71 -0.5
791,288 - AZOBR_RS17970 0.71 -1.7
791,288 - AZOBR_RS17970 0.71 -3.8
791,288 - AZOBR_RS17970 0.71 -1.9
791,288 - AZOBR_RS17970 0.71 +0.2
791,288 - AZOBR_RS17970 0.71 +0.0
791,288 - AZOBR_RS17970 0.71 -1.0
791,410 + AZOBR_RS17970 0.85 -3.9
791,410 + AZOBR_RS17970 0.85 -1.0
791,410 + AZOBR_RS17970 0.85 -2.3
791,410 + AZOBR_RS17970 0.85 -3.2
791,410 + AZOBR_RS17970 0.85 -1.4
791,410 + AZOBR_RS17970 0.85 -0.3
791,410 + AZOBR_RS17970 0.85 -0.1
791,410 + AZOBR_RS17970 0.85 -1.6
791,411 - AZOBR_RS17970 0.85 -1.6
791,411 - AZOBR_RS17970 0.85 -0.4

Or see this region's nucleotide sequence