Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS16260

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS16250 and AZOBR_RS16255 are separated by 72 nucleotidesAZOBR_RS16255 and AZOBR_RS16260 are separated by 40 nucleotidesAZOBR_RS16260 and AZOBR_RS16265 are separated by 77 nucleotidesAZOBR_RS16265 and AZOBR_RS16270 are separated by 22 nucleotides AZOBR_RS16250: AZOBR_RS16250 - LysR family transcriptional regulator, at 397,495 to 398,409 _RS16250 AZOBR_RS16255: AZOBR_RS16255 - membrane protein, at 398,482 to 398,964 _RS16255 AZOBR_RS16260: AZOBR_RS16260 - azoreductase, at 399,005 to 399,604 _RS16260 AZOBR_RS16265: AZOBR_RS16265 - 3-oxoacyl-ACP reductase, at 399,682 to 400,461 _RS16265 AZOBR_RS16270: AZOBR_RS16270 - DNA replication protein, at 400,484 to 401,164 _RS16270 Position (kb) 399 400Strain fitness (log2 ratio) -1 0 1at 398.236 kb on + strand, within AZOBR_RS16250at 398.734 kb on + strand, within AZOBR_RS16255at 398.735 kb on - strand, within AZOBR_RS16255at 398.735 kb on - strand, within AZOBR_RS16255at 398.735 kb on - strand, within AZOBR_RS16255at 399.266 kb on + strand, within AZOBR_RS16260at 399.267 kb on - strand, within AZOBR_RS16260at 399.408 kb on + strand, within AZOBR_RS16260at 399.409 kb on - strand, within AZOBR_RS16260

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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398,236 + AZOBR_RS16250 0.81 +0.1
398,734 + AZOBR_RS16255 0.52 +0.3
398,735 - AZOBR_RS16255 0.52 +0.8
398,735 - AZOBR_RS16255 0.52 +1.2
398,735 - AZOBR_RS16255 0.52 +1.1
399,266 + AZOBR_RS16260 0.43 +0.3
399,267 - AZOBR_RS16260 0.44 +1.2
399,408 + AZOBR_RS16260 0.67 +1.6
399,409 - AZOBR_RS16260 0.67 +0.2

Or see this region's nucleotide sequence