Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS05920 and AZOBR_RS05925 are separated by 278 nucleotides
AZOBR_RS05920: AZOBR_RS05920 - 3-oxoadipate enol-lactonase (Enol-lactone hydrolase) (Beta-ketoadipate enol-lactone hydrolase), at 1,254,906 to 1,255,685
_RS05920
AZOBR_RS05925: AZOBR_RS05925 - hypothetical protein, at 1,255,964 to 1,256,716
_RS05925
Position (kb)
1255
1256
1257 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1255.104 kb on + strand, within AZOBR_RS05920 at 1255.510 kb on + strand, within AZOBR_RS05920 at 1255.510 kb on + strand, within AZOBR_RS05920 at 1255.511 kb on - strand, within AZOBR_RS05920 at 1256.056 kb on + strand, within AZOBR_RS05925 at 1256.056 kb on + strand, within AZOBR_RS05925 at 1256.056 kb on + strand, within AZOBR_RS05925 at 1256.056 kb on + strand, within AZOBR_RS05925 at 1256.056 kb on + strand, within AZOBR_RS05925 at 1256.056 kb on + strand, within AZOBR_RS05925 at 1256.056 kb on + strand, within AZOBR_RS05925 at 1256.056 kb on + strand, within AZOBR_RS05925 at 1256.056 kb on + strand, within AZOBR_RS05925 at 1256.057 kb on - strand, within AZOBR_RS05925 at 1256.057 kb on - strand, within AZOBR_RS05925 at 1256.057 kb on - strand, within AZOBR_RS05925 at 1256.057 kb on - strand, within AZOBR_RS05925 at 1256.057 kb on - strand, within AZOBR_RS05925 at 1256.057 kb on - strand, within AZOBR_RS05925 at 1256.057 kb on - strand, within AZOBR_RS05925 at 1256.057 kb on - strand, within AZOBR_RS05925 at 1256.057 kb on - strand, within AZOBR_RS05925 at 1256.057 kb on - strand, within AZOBR_RS05925 at 1256.057 kb on - strand, within AZOBR_RS05925 at 1256.057 kb on - strand, within AZOBR_RS05925 at 1256.077 kb on - strand, within AZOBR_RS05925 at 1256.244 kb on + strand, within AZOBR_RS05925 at 1256.244 kb on + strand, within AZOBR_RS05925 at 1256.245 kb on - strand, within AZOBR_RS05925 at 1256.246 kb on + strand, within AZOBR_RS05925 at 1256.247 kb on - strand, within AZOBR_RS05925 at 1256.247 kb on - strand, within AZOBR_RS05925 at 1256.247 kb on - strand, within AZOBR_RS05925 at 1256.277 kb on - strand, within AZOBR_RS05925 at 1256.321 kb on + strand, within AZOBR_RS05925 at 1256.438 kb on - strand, within AZOBR_RS05925 at 1256.509 kb on + strand, within AZOBR_RS05925 at 1256.509 kb on + strand, within AZOBR_RS05925 at 1256.515 kb on - strand, within AZOBR_RS05925 at 1256.544 kb on + strand, within AZOBR_RS05925 at 1256.645 kb on + strand at 1256.645 kb on + strand at 1256.646 kb on - strand at 1256.763 kb on + strand at 1256.764 kb on - strand at 1256.776 kb on - strand at 1256.776 kb on - strand at 1256.804 kb on + strand at 1256.804 kb on + strand at 1256.804 kb on + strand at 1256.805 kb on - strand at 1256.833 kb on - strand at 1256.838 kb on + strand at 1256.896 kb on - strand at 1256.896 kb on - strand at 1257.291 kb on + strand at 1257.291 kb on + strand at 1257.291 kb on + strand at 1257.291 kb on + strand at 1257.291 kb on + strand at 1257.292 kb on - strand at 1257.292 kb on - strand at 1257.292 kb on - strand at 1257.387 kb on - strand at 1257.435 kb on + strand at 1257.435 kb on + strand at 1257.440 kb on + strand at 1257.440 kb on + strand at 1257.446 kb on + strand at 1257.446 kb on + strand at 1257.472 kb on + strand at 1257.472 kb on + strand at 1257.473 kb on - strand at 1257.474 kb on + strand at 1257.474 kb on + strand at 1257.475 kb on - strand at 1257.475 kb on - strand at 1257.480 kb on + strand at 1257.481 kb on - strand at 1257.481 kb on - strand at 1257.522 kb on + strand at 1257.522 kb on + strand at 1257.523 kb on - strand at 1257.611 kb on + strand at 1257.613 kb on + strand at 1257.613 kb on + strand at 1257.613 kb on + strand at 1257.614 kb on - strand at 1257.694 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 1,255,104 + AZOBR_RS05920 0.25 -0.4 1,255,510 + AZOBR_RS05920 0.77 +0.4 1,255,510 + AZOBR_RS05920 0.77 -1.3 1,255,511 - AZOBR_RS05920 0.78 -2.8 1,256,056 + AZOBR_RS05925 0.12 -0.9 1,256,056 + AZOBR_RS05925 0.12 +0.7 1,256,056 + AZOBR_RS05925 0.12 +1.2 1,256,056 + AZOBR_RS05925 0.12 +0.9 1,256,056 + AZOBR_RS05925 0.12 +0.6 1,256,056 + AZOBR_RS05925 0.12 -0.0 1,256,056 + AZOBR_RS05925 0.12 +0.1 1,256,056 + AZOBR_RS05925 0.12 -3.4 1,256,056 + AZOBR_RS05925 0.12 +0.7 1,256,057 - AZOBR_RS05925 0.12 -0.6 1,256,057 - AZOBR_RS05925 0.12 -1.1 1,256,057 - AZOBR_RS05925 0.12 -0.6 1,256,057 - AZOBR_RS05925 0.12 +0.9 1,256,057 - AZOBR_RS05925 0.12 +0.0 1,256,057 - AZOBR_RS05925 0.12 -0.5 1,256,057 - AZOBR_RS05925 0.12 +1.0 1,256,057 - AZOBR_RS05925 0.12 -0.5 1,256,057 - AZOBR_RS05925 0.12 +0.2 1,256,057 - AZOBR_RS05925 0.12 +0.4 1,256,057 - AZOBR_RS05925 0.12 +0.7 1,256,057 - AZOBR_RS05925 0.12 -0.4 1,256,077 - AZOBR_RS05925 0.15 -0.3 1,256,244 + AZOBR_RS05925 0.37 +0.1 1,256,244 + AZOBR_RS05925 0.37 +0.5 1,256,245 - AZOBR_RS05925 0.37 +0.5 1,256,246 + AZOBR_RS05925 0.37 +3.7 1,256,247 - AZOBR_RS05925 0.38 -0.6 1,256,247 - AZOBR_RS05925 0.38 -2.0 1,256,247 - AZOBR_RS05925 0.38 -1.2 1,256,277 - AZOBR_RS05925 0.42 +1.0 1,256,321 + AZOBR_RS05925 0.47 -0.7 1,256,438 - AZOBR_RS05925 0.63 +1.1 1,256,509 + AZOBR_RS05925 0.72 +0.4 1,256,509 + AZOBR_RS05925 0.72 -0.6 1,256,515 - AZOBR_RS05925 0.73 +1.5 1,256,544 + AZOBR_RS05925 0.77 +1.0 1,256,645 + -1.0 1,256,645 + -2.7 1,256,646 - -1.7 1,256,763 + +0.2 1,256,764 - -2.0 1,256,776 - +2.1 1,256,776 - -0.6 1,256,804 + -1.5 1,256,804 + -3.5 1,256,804 + +0.3 1,256,805 - -0.6 1,256,833 - -2.9 1,256,838 + -3.0 1,256,896 - +1.8 1,256,896 - +2.0 1,257,291 + -2.1 1,257,291 + +0.4 1,257,291 + +0.3 1,257,291 + +0.4 1,257,291 + +1.8 1,257,292 - +0.9 1,257,292 - +0.6 1,257,292 - +0.8 1,257,387 - -1.5 1,257,435 + -2.1 1,257,435 + +0.2 1,257,440 + +0.9 1,257,440 + +0.1 1,257,446 + -0.3 1,257,446 + +0.3 1,257,472 + +0.3 1,257,472 + +1.1 1,257,473 - -1.2 1,257,474 + +0.2 1,257,474 + +1.2 1,257,475 - +1.8 1,257,475 - -2.3 1,257,480 + -2.5 1,257,481 - -0.0 1,257,481 - -1.7 1,257,522 + -1.2 1,257,522 + -0.1 1,257,523 - -0.1 1,257,611 + -0.2 1,257,613 + +0.9 1,257,613 + -2.8 1,257,613 + -1.9 1,257,614 - -0.4 1,257,694 + +0.1
Or see this region's nucleotide sequence