Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS05925

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS05920 and AZOBR_RS05925 are separated by 278 nucleotides AZOBR_RS05920: AZOBR_RS05920 - 3-oxoadipate enol-lactonase (Enol-lactone hydrolase) (Beta-ketoadipate enol-lactone hydrolase), at 1,254,906 to 1,255,685 _RS05920 AZOBR_RS05925: AZOBR_RS05925 - hypothetical protein, at 1,255,964 to 1,256,716 _RS05925 Position (kb) 1255 1256 1257Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1255.104 kb on + strand, within AZOBR_RS05920at 1255.510 kb on + strand, within AZOBR_RS05920at 1255.510 kb on + strand, within AZOBR_RS05920at 1255.511 kb on - strand, within AZOBR_RS05920at 1256.056 kb on + strand, within AZOBR_RS05925at 1256.056 kb on + strand, within AZOBR_RS05925at 1256.056 kb on + strand, within AZOBR_RS05925at 1256.056 kb on + strand, within AZOBR_RS05925at 1256.056 kb on + strand, within AZOBR_RS05925at 1256.056 kb on + strand, within AZOBR_RS05925at 1256.056 kb on + strand, within AZOBR_RS05925at 1256.056 kb on + strand, within AZOBR_RS05925at 1256.056 kb on + strand, within AZOBR_RS05925at 1256.057 kb on - strand, within AZOBR_RS05925at 1256.057 kb on - strand, within AZOBR_RS05925at 1256.057 kb on - strand, within AZOBR_RS05925at 1256.057 kb on - strand, within AZOBR_RS05925at 1256.057 kb on - strand, within AZOBR_RS05925at 1256.057 kb on - strand, within AZOBR_RS05925at 1256.057 kb on - strand, within AZOBR_RS05925at 1256.057 kb on - strand, within AZOBR_RS05925at 1256.057 kb on - strand, within AZOBR_RS05925at 1256.057 kb on - strand, within AZOBR_RS05925at 1256.057 kb on - strand, within AZOBR_RS05925at 1256.057 kb on - strand, within AZOBR_RS05925at 1256.077 kb on - strand, within AZOBR_RS05925at 1256.244 kb on + strand, within AZOBR_RS05925at 1256.244 kb on + strand, within AZOBR_RS05925at 1256.245 kb on - strand, within AZOBR_RS05925at 1256.246 kb on + strand, within AZOBR_RS05925at 1256.247 kb on - strand, within AZOBR_RS05925at 1256.247 kb on - strand, within AZOBR_RS05925at 1256.247 kb on - strand, within AZOBR_RS05925at 1256.277 kb on - strand, within AZOBR_RS05925at 1256.321 kb on + strand, within AZOBR_RS05925at 1256.438 kb on - strand, within AZOBR_RS05925at 1256.509 kb on + strand, within AZOBR_RS05925at 1256.509 kb on + strand, within AZOBR_RS05925at 1256.515 kb on - strand, within AZOBR_RS05925at 1256.544 kb on + strand, within AZOBR_RS05925at 1256.645 kb on + strandat 1256.645 kb on + strandat 1256.646 kb on - strandat 1256.763 kb on + strandat 1256.764 kb on - strandat 1256.776 kb on - strandat 1256.776 kb on - strandat 1256.804 kb on + strandat 1256.804 kb on + strandat 1256.804 kb on + strandat 1256.805 kb on - strandat 1256.833 kb on - strandat 1256.838 kb on + strandat 1256.896 kb on - strandat 1256.896 kb on - strandat 1257.291 kb on + strandat 1257.291 kb on + strandat 1257.291 kb on + strandat 1257.291 kb on + strandat 1257.291 kb on + strandat 1257.292 kb on - strandat 1257.292 kb on - strandat 1257.292 kb on - strandat 1257.387 kb on - strandat 1257.435 kb on + strandat 1257.435 kb on + strandat 1257.440 kb on + strandat 1257.440 kb on + strandat 1257.446 kb on + strandat 1257.446 kb on + strandat 1257.472 kb on + strandat 1257.472 kb on + strandat 1257.473 kb on - strandat 1257.474 kb on + strandat 1257.474 kb on + strandat 1257.475 kb on - strandat 1257.475 kb on - strandat 1257.480 kb on + strandat 1257.481 kb on - strandat 1257.481 kb on - strandat 1257.522 kb on + strandat 1257.522 kb on + strandat 1257.523 kb on - strandat 1257.611 kb on + strandat 1257.613 kb on + strandat 1257.613 kb on + strandat 1257.613 kb on + strandat 1257.614 kb on - strandat 1257.694 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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1,255,104 + AZOBR_RS05920 0.25 -0.4
1,255,510 + AZOBR_RS05920 0.77 +0.4
1,255,510 + AZOBR_RS05920 0.77 -1.3
1,255,511 - AZOBR_RS05920 0.78 -2.8
1,256,056 + AZOBR_RS05925 0.12 -0.9
1,256,056 + AZOBR_RS05925 0.12 +0.7
1,256,056 + AZOBR_RS05925 0.12 +1.2
1,256,056 + AZOBR_RS05925 0.12 +0.9
1,256,056 + AZOBR_RS05925 0.12 +0.6
1,256,056 + AZOBR_RS05925 0.12 -0.0
1,256,056 + AZOBR_RS05925 0.12 +0.1
1,256,056 + AZOBR_RS05925 0.12 -3.4
1,256,056 + AZOBR_RS05925 0.12 +0.7
1,256,057 - AZOBR_RS05925 0.12 -0.6
1,256,057 - AZOBR_RS05925 0.12 -1.1
1,256,057 - AZOBR_RS05925 0.12 -0.6
1,256,057 - AZOBR_RS05925 0.12 +0.9
1,256,057 - AZOBR_RS05925 0.12 +0.0
1,256,057 - AZOBR_RS05925 0.12 -0.5
1,256,057 - AZOBR_RS05925 0.12 +1.0
1,256,057 - AZOBR_RS05925 0.12 -0.5
1,256,057 - AZOBR_RS05925 0.12 +0.2
1,256,057 - AZOBR_RS05925 0.12 +0.4
1,256,057 - AZOBR_RS05925 0.12 +0.7
1,256,057 - AZOBR_RS05925 0.12 -0.4
1,256,077 - AZOBR_RS05925 0.15 -0.3
1,256,244 + AZOBR_RS05925 0.37 +0.1
1,256,244 + AZOBR_RS05925 0.37 +0.5
1,256,245 - AZOBR_RS05925 0.37 +0.5
1,256,246 + AZOBR_RS05925 0.37 +3.7
1,256,247 - AZOBR_RS05925 0.38 -0.6
1,256,247 - AZOBR_RS05925 0.38 -2.0
1,256,247 - AZOBR_RS05925 0.38 -1.2
1,256,277 - AZOBR_RS05925 0.42 +1.0
1,256,321 + AZOBR_RS05925 0.47 -0.7
1,256,438 - AZOBR_RS05925 0.63 +1.1
1,256,509 + AZOBR_RS05925 0.72 +0.4
1,256,509 + AZOBR_RS05925 0.72 -0.6
1,256,515 - AZOBR_RS05925 0.73 +1.5
1,256,544 + AZOBR_RS05925 0.77 +1.0
1,256,645 + -1.0
1,256,645 + -2.7
1,256,646 - -1.7
1,256,763 + +0.2
1,256,764 - -2.0
1,256,776 - +2.1
1,256,776 - -0.6
1,256,804 + -1.5
1,256,804 + -3.5
1,256,804 + +0.3
1,256,805 - -0.6
1,256,833 - -2.9
1,256,838 + -3.0
1,256,896 - +1.8
1,256,896 - +2.0
1,257,291 + -2.1
1,257,291 + +0.4
1,257,291 + +0.3
1,257,291 + +0.4
1,257,291 + +1.8
1,257,292 - +0.9
1,257,292 - +0.6
1,257,292 - +0.8
1,257,387 - -1.5
1,257,435 + -2.1
1,257,435 + +0.2
1,257,440 + +0.9
1,257,440 + +0.1
1,257,446 + -0.3
1,257,446 + +0.3
1,257,472 + +0.3
1,257,472 + +1.1
1,257,473 - -1.2
1,257,474 + +0.2
1,257,474 + +1.2
1,257,475 - +1.8
1,257,475 - -2.3
1,257,480 + -2.5
1,257,481 - -0.0
1,257,481 - -1.7
1,257,522 + -1.2
1,257,522 + -0.1
1,257,523 - -0.1
1,257,611 + -0.2
1,257,613 + +0.9
1,257,613 + -2.8
1,257,613 + -1.9
1,257,614 - -0.4
1,257,694 + +0.1

Or see this region's nucleotide sequence