Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS05645

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS05640 and AZOBR_RS05645 are separated by 62 nucleotidesAZOBR_RS05645 and AZOBR_RS05650 are separated by 40 nucleotidesAZOBR_RS05650 and AZOBR_RS05655 overlap by 4 nucleotides AZOBR_RS05640: AZOBR_RS05640 - nitrogen fixation protein NifZ, at 1,197,317 to 1,197,589 _RS05640 AZOBR_RS05645: AZOBR_RS05645 - nifZ nitrogenase P-cluster assembly, at 1,197,652 to 1,197,948 _RS05645 AZOBR_RS05650: AZOBR_RS05650 - hypothetical protein, at 1,197,989 to 1,198,762 _RS05650 AZOBR_RS05655: AZOBR_RS05655 - hypothetical protein, at 1,198,759 to 1,199,307 _RS05655 Position (kb) 1197 1198Strain fitness (log2 ratio) -3 -2 -1 0 1at 1197.275 kb on + strandat 1197.275 kb on + strandat 1197.275 kb on + strandat 1197.275 kb on + strandat 1197.275 kb on + strandat 1197.276 kb on - strandat 1197.276 kb on - strandat 1197.417 kb on + strand, within AZOBR_RS05640at 1197.417 kb on + strand, within AZOBR_RS05640at 1197.417 kb on + strand, within AZOBR_RS05640at 1197.745 kb on + strand, within AZOBR_RS05645at 1197.753 kb on - strand, within AZOBR_RS05645at 1197.836 kb on + strand, within AZOBR_RS05645at 1197.837 kb on - strand, within AZOBR_RS05645at 1197.837 kb on - strand, within AZOBR_RS05645at 1198.348 kb on - strand, within AZOBR_RS05650at 1198.566 kb on + strand, within AZOBR_RS05650at 1198.566 kb on + strand, within AZOBR_RS05650at 1198.566 kb on + strand, within AZOBR_RS05650at 1198.567 kb on - strand, within AZOBR_RS05650at 1198.567 kb on - strand, within AZOBR_RS05650at 1198.635 kb on + strand, within AZOBR_RS05650

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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1,197,275 + +0.6
1,197,275 + -1.1
1,197,275 + -1.1
1,197,275 + +1.1
1,197,275 + +1.2
1,197,276 - +1.3
1,197,276 - +0.9
1,197,417 + AZOBR_RS05640 0.37 +0.3
1,197,417 + AZOBR_RS05640 0.37 -1.2
1,197,417 + AZOBR_RS05640 0.37 +0.4
1,197,745 + AZOBR_RS05645 0.31 -0.5
1,197,753 - AZOBR_RS05645 0.34 -0.3
1,197,836 + AZOBR_RS05645 0.62 -0.2
1,197,837 - AZOBR_RS05645 0.62 +0.7
1,197,837 - AZOBR_RS05645 0.62 -1.1
1,198,348 - AZOBR_RS05650 0.46 +1.7
1,198,566 + AZOBR_RS05650 0.75 -2.2
1,198,566 + AZOBR_RS05650 0.75 -3.3
1,198,566 + AZOBR_RS05650 0.75 +1.2
1,198,567 - AZOBR_RS05650 0.75 -0.5
1,198,567 - AZOBR_RS05650 0.75 -1.2
1,198,635 + AZOBR_RS05650 0.83 +1.1

Or see this region's nucleotide sequence