Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29495 and AO356_29500 are separated by 32 nucleotides AO356_29500 and AO356_29505 are separated by 191 nucleotides AO356_29505 and AO356_29510 are separated by 1 nucleotides
AO356_29495: AO356_29495 - NADPH:quinone oxidoreductase, at 6,860,598 to 6,861,572
_29495
AO356_29500: AO356_29500 - monooxygenase, at 6,861,605 to 6,861,964
_29500
AO356_29505: AO356_29505 - biopolymer transporter ExbD, at 6,862,156 to 6,862,557
_29505
AO356_29510: AO356_29510 - biopolymer transporter ExbB, at 6,862,559 to 6,863,278
_29510
Position (kb)
6861
6862 Strain fitness (log2 ratio)
-1
0
1
2 at 6860.615 kb on + strand at 6860.615 kb on + strand at 6860.616 kb on - strand at 6860.616 kb on - strand at 6860.856 kb on + strand, within AO356_29495 at 6860.889 kb on + strand, within AO356_29495 at 6860.890 kb on - strand, within AO356_29495 at 6860.890 kb on - strand, within AO356_29495 at 6861.177 kb on + strand, within AO356_29495 at 6861.192 kb on + strand, within AO356_29495 at 6861.192 kb on + strand, within AO356_29495 at 6861.192 kb on + strand, within AO356_29495 at 6861.193 kb on - strand, within AO356_29495 at 6861.193 kb on - strand, within AO356_29495 at 6861.193 kb on - strand, within AO356_29495 at 6861.372 kb on + strand, within AO356_29495 at 6861.373 kb on - strand, within AO356_29495 at 6861.469 kb on - strand, within AO356_29495 at 6861.584 kb on + strand at 6861.584 kb on + strand at 6861.612 kb on - strand at 6861.765 kb on + strand, within AO356_29500 at 6861.766 kb on - strand, within AO356_29500 at 6861.766 kb on - strand, within AO356_29500 at 6861.910 kb on + strand, within AO356_29500 at 6861.910 kb on + strand, within AO356_29500 at 6861.938 kb on - strand at 6861.938 kb on - strand at 6861.994 kb on + strand at 6861.994 kb on + strand at 6861.994 kb on + strand at 6861.994 kb on + strand at 6861.995 kb on - strand at 6862.026 kb on - strand at 6862.026 kb on - strand at 6862.042 kb on + strand at 6862.082 kb on + strand at 6862.082 kb on + strand at 6862.089 kb on + strand at 6862.089 kb on + strand at 6862.089 kb on + strand at 6862.089 kb on + strand at 6862.090 kb on - strand at 6862.090 kb on - strand at 6862.090 kb on - strand at 6862.090 kb on - strand at 6862.090 kb on - strand at 6862.090 kb on - strand at 6862.157 kb on + strand at 6862.158 kb on - strand at 6862.158 kb on - strand at 6862.232 kb on + strand, within AO356_29505 at 6862.233 kb on - strand, within AO356_29505 at 6862.233 kb on - strand, within AO356_29505 at 6862.233 kb on - strand, within AO356_29505 at 6862.267 kb on + strand, within AO356_29505 at 6862.267 kb on + strand, within AO356_29505 at 6862.268 kb on - strand, within AO356_29505 at 6862.268 kb on - strand, within AO356_29505 at 6862.465 kb on - strand, within AO356_29505 at 6862.465 kb on - strand, within AO356_29505 at 6862.654 kb on + strand, within AO356_29510 at 6862.655 kb on - strand, within AO356_29510 at 6862.656 kb on + strand at 6862.656 kb on + strand, within AO356_29510 at 6862.656 kb on + strand, within AO356_29510 at 6862.657 kb on - strand, within AO356_29510 at 6862.657 kb on - strand, within AO356_29510 at 6862.657 kb on - strand, within AO356_29510 at 6862.716 kb on + strand, within AO356_29510 at 6862.716 kb on + strand, within AO356_29510 at 6862.717 kb on - strand, within AO356_29510 at 6862.717 kb on - strand, within AO356_29510 at 6862.722 kb on + strand, within AO356_29510 at 6862.723 kb on - strand, within AO356_29510 at 6862.796 kb on + strand, within AO356_29510 at 6862.877 kb on + strand, within AO356_29510 at 6862.878 kb on - strand, within AO356_29510 at 6862.878 kb on - strand, within AO356_29510
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 6,860,615 + +1.1 6,860,615 + +0.4 6,860,616 - -0.6 6,860,616 - -0.4 6,860,856 + AO356_29495 0.26 +0.2 6,860,889 + AO356_29495 0.30 -0.2 6,860,890 - AO356_29495 0.30 +0.3 6,860,890 - AO356_29495 0.30 +0.1 6,861,177 + AO356_29495 0.59 +0.9 6,861,192 + AO356_29495 0.61 -0.1 6,861,192 + AO356_29495 0.61 -0.2 6,861,192 + AO356_29495 0.61 -0.5 6,861,193 - AO356_29495 0.61 +1.0 6,861,193 - AO356_29495 0.61 +0.3 6,861,193 - AO356_29495 0.61 +0.1 6,861,372 + AO356_29495 0.79 -0.2 6,861,373 - AO356_29495 0.79 +1.3 6,861,469 - AO356_29495 0.89 -0.4 6,861,584 + +0.9 6,861,584 + -0.6 6,861,612 - +0.5 6,861,765 + AO356_29500 0.44 -0.4 6,861,766 - AO356_29500 0.45 -0.8 6,861,766 - AO356_29500 0.45 -0.4 6,861,910 + AO356_29500 0.85 -0.1 6,861,910 + AO356_29500 0.85 +0.2 6,861,938 - -0.8 6,861,938 - +1.6 6,861,994 + +2.2 6,861,994 + -0.1 6,861,994 + -0.4 6,861,994 + +0.3 6,861,995 - -0.2 6,862,026 - +0.2 6,862,026 - -0.2 6,862,042 + -0.6 6,862,082 + +0.9 6,862,082 + -0.1 6,862,089 + +0.6 6,862,089 + +0.5 6,862,089 + +0.1 6,862,089 + +0.7 6,862,090 - +1.2 6,862,090 - -0.1 6,862,090 - +0.5 6,862,090 - -0.1 6,862,090 - -0.7 6,862,090 - +0.8 6,862,157 + -1.0 6,862,158 - +0.5 6,862,158 - -0.1 6,862,232 + AO356_29505 0.19 -0.2 6,862,233 - AO356_29505 0.19 +1.0 6,862,233 - AO356_29505 0.19 +0.3 6,862,233 - AO356_29505 0.19 +0.1 6,862,267 + AO356_29505 0.28 +0.1 6,862,267 + AO356_29505 0.28 +0.4 6,862,268 - AO356_29505 0.28 +0.8 6,862,268 - AO356_29505 0.28 -0.6 6,862,465 - AO356_29505 0.77 -1.0 6,862,465 - AO356_29505 0.77 -0.7 6,862,654 + AO356_29510 0.13 +0.9 6,862,655 - AO356_29510 0.13 +0.8 6,862,656 + +0.6 6,862,656 + AO356_29510 0.13 +0.8 6,862,656 + AO356_29510 0.13 +0.6 6,862,657 - AO356_29510 0.14 -0.4 6,862,657 - AO356_29510 0.14 -0.4 6,862,657 - AO356_29510 0.14 +0.2 6,862,716 + AO356_29510 0.22 -0.8 6,862,716 + AO356_29510 0.22 +0.4 6,862,717 - AO356_29510 0.22 -0.6 6,862,717 - AO356_29510 0.22 +0.5 6,862,722 + AO356_29510 0.23 +0.1 6,862,723 - AO356_29510 0.23 -0.4 6,862,796 + AO356_29510 0.33 -0.5 6,862,877 + AO356_29510 0.44 +1.0 6,862,878 - AO356_29510 0.44 +0.7 6,862,878 - AO356_29510 0.44 -0.5
Or see this region's nucleotide sequence