Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28230

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28225 and AO356_28230 are separated by 34 nucleotidesAO356_28230 and AO356_28235 are separated by 339 nucleotides AO356_28225: AO356_28225 - ATP-binding protein, at 6,521,555 to 6,523,255 _28225 AO356_28230: AO356_28230 - syrP protein, at 6,523,290 to 6,524,351 _28230 AO356_28235: AO356_28235 - thioester reductase, at 6,524,691 to 6,526,538 _28235 Position (kb) 6523 6524 6525Strain fitness (log2 ratio) -1 0 1at 6522.334 kb on + strand, within AO356_28225at 6522.402 kb on + strand, within AO356_28225at 6522.552 kb on + strand, within AO356_28225at 6522.679 kb on - strand, within AO356_28225at 6522.732 kb on + strand, within AO356_28225at 6522.792 kb on + strand, within AO356_28225at 6522.844 kb on + strand, within AO356_28225at 6522.866 kb on - strand, within AO356_28225at 6523.168 kb on + strandat 6523.168 kb on + strandat 6523.169 kb on - strandat 6523.305 kb on + strandat 6523.912 kb on + strand, within AO356_28230at 6524.356 kb on - strandat 6524.593 kb on - strandat 6524.835 kb on + strandat 6524.904 kb on - strand, within AO356_28235at 6524.904 kb on - strand, within AO356_28235at 6525.186 kb on + strand, within AO356_28235at 6525.195 kb on + strand, within AO356_28235at 6525.195 kb on + strand, within AO356_28235at 6525.195 kb on + strand, within AO356_28235at 6525.196 kb on - strand, within AO356_28235at 6525.196 kb on - strand, within AO356_28235at 6525.198 kb on - strand, within AO356_28235at 6525.270 kb on - strand, within AO356_28235

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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6,522,334 + AO356_28225 0.46 -0.7
6,522,402 + AO356_28225 0.50 +0.7
6,522,552 + AO356_28225 0.59 -1.4
6,522,679 - AO356_28225 0.66 +0.0
6,522,732 + AO356_28225 0.69 -0.4
6,522,792 + AO356_28225 0.73 +0.3
6,522,844 + AO356_28225 0.76 +0.3
6,522,866 - AO356_28225 0.77 +0.4
6,523,168 + -0.5
6,523,168 + -1.3
6,523,169 - +0.4
6,523,305 + +1.0
6,523,912 + AO356_28230 0.59 +0.1
6,524,356 - -0.1
6,524,593 - +0.2
6,524,835 + -0.7
6,524,904 - AO356_28235 0.12 +0.4
6,524,904 - AO356_28235 0.12 -0.3
6,525,186 + AO356_28235 0.27 +0.4
6,525,195 + AO356_28235 0.27 +0.6
6,525,195 + AO356_28235 0.27 +0.3
6,525,195 + AO356_28235 0.27 +1.4
6,525,196 - AO356_28235 0.27 -0.1
6,525,196 - AO356_28235 0.27 -0.7
6,525,198 - AO356_28235 0.27 +0.0
6,525,270 - AO356_28235 0.31 +0.1

Or see this region's nucleotide sequence