Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25680 and AO356_25685 are separated by 15 nucleotides AO356_25685 and AO356_25690 are separated by 319 nucleotides AO356_25690 and AO356_25695 are separated by 208 nucleotides
AO356_25680: AO356_25680 - carbon starvation protein A, at 5,807,013 to 5,809,073
_25680
AO356_25685: AO356_25685 - hypothetical protein, at 5,809,089 to 5,809,286
_25685
AO356_25690: AO356_25690 - chemotaxis protein, at 5,809,606 to 5,811,402
_25690
AO356_25695: AO356_25695 - ligand-gated channel, at 5,811,611 to 5,813,734
_25695
Position (kb)
5809
5810
5811
5812 Strain fitness (log2 ratio)
-2
-1
0
1 at 5809.519 kb on - strand at 5809.682 kb on - strand at 5809.721 kb on + strand at 5809.722 kb on - strand at 5809.967 kb on + strand, within AO356_25690 at 5809.980 kb on - strand, within AO356_25690 at 5810.469 kb on + strand, within AO356_25690 at 5810.470 kb on - strand, within AO356_25690 at 5810.738 kb on + strand, within AO356_25690 at 5811.372 kb on + strand at 5811.381 kb on - strand at 5811.381 kb on - strand at 5811.466 kb on + strand at 5811.495 kb on - strand at 5811.538 kb on + strand at 5811.539 kb on - strand at 5811.634 kb on - strand at 5811.772 kb on + strand at 5811.773 kb on - strand at 5811.810 kb on + strand at 5811.811 kb on - strand at 5812.172 kb on + strand, within AO356_25695 at 5812.272 kb on - strand, within AO356_25695 at 5812.284 kb on - strand, within AO356_25695 at 5812.284 kb on - strand, within AO356_25695 at 5812.358 kb on + strand, within AO356_25695 at 5812.359 kb on - strand, within AO356_25695 at 5812.359 kb on - strand, within AO356_25695 at 5812.373 kb on + strand, within AO356_25695 at 5812.374 kb on - strand, within AO356_25695
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,809,519 - +0.4 5,809,682 - -0.5 5,809,721 + -1.8 5,809,722 - -0.8 5,809,967 + AO356_25690 0.20 -0.5 5,809,980 - AO356_25690 0.21 -0.5 5,810,469 + AO356_25690 0.48 +0.8 5,810,470 - AO356_25690 0.48 +0.8 5,810,738 + AO356_25690 0.63 -0.9 5,811,372 + -0.2 5,811,381 - +0.1 5,811,381 - +0.5 5,811,466 + +0.1 5,811,495 - -0.5 5,811,538 + -0.9 5,811,539 - -0.7 5,811,634 - -0.8 5,811,772 + -0.2 5,811,773 - +0.7 5,811,810 + -0.3 5,811,811 - +1.0 5,812,172 + AO356_25695 0.26 +0.5 5,812,272 - AO356_25695 0.31 +0.1 5,812,284 - AO356_25695 0.32 -0.4 5,812,284 - AO356_25695 0.32 -0.6 5,812,358 + AO356_25695 0.35 -0.2 5,812,359 - AO356_25695 0.35 -0.9 5,812,359 - AO356_25695 0.35 +0.7 5,812,373 + AO356_25695 0.36 -0.9 5,812,374 - AO356_25695 0.36 +0.3
Or see this region's nucleotide sequence