Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24815 and AO356_24820 are separated by 340 nucleotides AO356_24820 and AO356_24825 are separated by 129 nucleotides AO356_24825 and AO356_24830 overlap by 8 nucleotides
AO356_24815: AO356_24815 - diguanylate cyclase, at 5,623,852 to 5,626,425
_24815
AO356_24820: AO356_24820 - calcium-binding protein, at 5,626,766 to 5,627,152
_24820
AO356_24825: AO356_24825 - hypothetical protein, at 5,627,282 to 5,628,127
_24825
AO356_24830: AO356_24830 - hypothetical protein, at 5,628,120 to 5,628,881
_24830
Position (kb)
5626
5627
5628 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5625.996 kb on + strand, within AO356_24815 at 5626.094 kb on + strand, within AO356_24815 at 5626.095 kb on - strand, within AO356_24815 at 5626.124 kb on + strand, within AO356_24815 at 5626.124 kb on + strand, within AO356_24815 at 5626.426 kb on - strand at 5626.431 kb on + strand at 5626.431 kb on + strand at 5626.432 kb on - strand at 5626.432 kb on - strand at 5626.432 kb on - strand at 5626.493 kb on + strand at 5626.597 kb on + strand at 5626.598 kb on - strand at 5626.601 kb on + strand at 5626.602 kb on - strand at 5626.602 kb on - strand at 5626.602 kb on - strand at 5626.602 kb on - strand at 5626.687 kb on + strand at 5626.688 kb on - strand at 5626.691 kb on + strand at 5626.692 kb on - strand at 5626.738 kb on + strand at 5626.739 kb on - strand at 5626.761 kb on - strand at 5626.761 kb on - strand at 5626.877 kb on + strand, within AO356_24820 at 5627.078 kb on + strand, within AO356_24820 at 5627.079 kb on - strand, within AO356_24820 at 5627.079 kb on - strand, within AO356_24820 at 5627.579 kb on + strand, within AO356_24825 at 5627.580 kb on - strand, within AO356_24825 at 5627.603 kb on + strand, within AO356_24825 at 5627.603 kb on + strand, within AO356_24825 at 5627.603 kb on + strand, within AO356_24825 at 5627.715 kb on - strand, within AO356_24825 at 5627.906 kb on + strand, within AO356_24825
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,625,996 + AO356_24815 0.83 -0.6 5,626,094 + AO356_24815 0.87 -0.4 5,626,095 - AO356_24815 0.87 -0.4 5,626,124 + AO356_24815 0.88 -1.9 5,626,124 + AO356_24815 0.88 -0.1 5,626,426 - +1.6 5,626,431 + +0.2 5,626,431 + +0.2 5,626,432 - +0.1 5,626,432 - -0.0 5,626,432 - -0.4 5,626,493 + +0.3 5,626,597 + +0.6 5,626,598 - -0.5 5,626,601 + +0.6 5,626,602 - -0.6 5,626,602 - +0.8 5,626,602 - -0.1 5,626,602 - -0.5 5,626,687 + -0.8 5,626,688 - +0.6 5,626,691 + +2.0 5,626,692 - -0.4 5,626,738 + +1.8 5,626,739 - +0.6 5,626,761 - -0.7 5,626,761 - -0.2 5,626,877 + AO356_24820 0.29 +0.1 5,627,078 + AO356_24820 0.81 +0.3 5,627,079 - AO356_24820 0.81 +0.3 5,627,079 - AO356_24820 0.81 -0.2 5,627,579 + AO356_24825 0.35 -0.1 5,627,580 - AO356_24825 0.35 +0.0 5,627,603 + AO356_24825 0.38 -0.9 5,627,603 + AO356_24825 0.38 +0.0 5,627,603 + AO356_24825 0.38 +0.3 5,627,715 - AO356_24825 0.51 +0.6 5,627,906 + AO356_24825 0.74 -0.6
Or see this region's nucleotide sequence