Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24800

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24795 and AO356_24800 overlap by 1 nucleotidesAO356_24800 and AO356_24805 are separated by 509 nucleotides AO356_24795: AO356_24795 - type II secretion system protein GspE, at 5,606,515 to 5,607,933 _24795 AO356_24800: AO356_24800 - type II secretion system protein GspF, at 5,607,933 to 5,609,144 _24800 AO356_24805: AO356_24805 - alkaline phosphatase, at 5,609,654 to 5,610,823 _24805 Position (kb) 5607 5608 5609 5610Strain fitness (log2 ratio) -1 0 1 2at 5607.284 kb on - strand, within AO356_24795at 5607.350 kb on - strand, within AO356_24795at 5608.392 kb on + strand, within AO356_24800at 5608.393 kb on - strand, within AO356_24800at 5608.410 kb on - strand, within AO356_24800at 5608.444 kb on - strand, within AO356_24800at 5608.497 kb on + strand, within AO356_24800at 5608.498 kb on - strand, within AO356_24800at 5608.650 kb on + strand, within AO356_24800at 5608.650 kb on + strand, within AO356_24800at 5608.650 kb on + strand, within AO356_24800at 5608.650 kb on + strand, within AO356_24800at 5608.651 kb on - strand, within AO356_24800at 5609.069 kb on + strandat 5609.221 kb on + strandat 5609.523 kb on + strandat 5609.523 kb on + strandat 5609.623 kb on + strandat 5609.623 kb on + strandat 5609.623 kb on + strandat 5609.624 kb on - strandat 5609.628 kb on - strandat 5609.628 kb on - strandat 5609.628 kb on - strandat 5609.628 kb on - strandat 5609.628 kb on - strandat 5609.659 kb on + strandat 5609.746 kb on + strandat 5609.746 kb on + strandat 5609.747 kb on - strandat 5609.804 kb on + strand, within AO356_24805at 5609.804 kb on + strand, within AO356_24805at 5609.805 kb on - strand, within AO356_24805at 5609.855 kb on + strand, within AO356_24805at 5609.946 kb on - strand, within AO356_24805at 5609.946 kb on - strand, within AO356_24805at 5609.946 kb on - strand, within AO356_24805at 5609.946 kb on - strand, within AO356_24805at 5609.946 kb on - strand, within AO356_24805

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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5,607,284 - AO356_24795 0.54 +0.0
5,607,350 - AO356_24795 0.59 -0.6
5,608,392 + AO356_24800 0.38 +0.0
5,608,393 - AO356_24800 0.38 +1.1
5,608,410 - AO356_24800 0.39 +0.1
5,608,444 - AO356_24800 0.42 +0.2
5,608,497 + AO356_24800 0.47 +0.6
5,608,498 - AO356_24800 0.47 +0.8
5,608,650 + AO356_24800 0.59 -0.4
5,608,650 + AO356_24800 0.59 +0.4
5,608,650 + AO356_24800 0.59 +0.6
5,608,650 + AO356_24800 0.59 +0.4
5,608,651 - AO356_24800 0.59 +0.2
5,609,069 + -0.0
5,609,221 + +1.6
5,609,523 + +0.1
5,609,523 + -0.4
5,609,623 + -0.8
5,609,623 + +1.3
5,609,623 + -0.9
5,609,624 - -1.4
5,609,628 - -0.2
5,609,628 - +0.5
5,609,628 - +0.2
5,609,628 - -0.5
5,609,628 - -0.4
5,609,659 + -0.6
5,609,746 + +0.2
5,609,746 + -0.2
5,609,747 - -0.6
5,609,804 + AO356_24805 0.13 +1.1
5,609,804 + AO356_24805 0.13 -0.4
5,609,805 - AO356_24805 0.13 -0.7
5,609,855 + AO356_24805 0.17 +1.1
5,609,946 - AO356_24805 0.25 -0.1
5,609,946 - AO356_24805 0.25 +1.8
5,609,946 - AO356_24805 0.25 +0.4
5,609,946 - AO356_24805 0.25 +1.3
5,609,946 - AO356_24805 0.25 +1.1

Or see this region's nucleotide sequence