Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_23925 and AO356_23930 are separated by 331 nucleotides AO356_23930 and AO356_23935 are separated by 88 nucleotides AO356_23935 and AO356_23940 are separated by 130 nucleotides
AO356_23925: AO356_23925 - mRNA 3'-end processing factor, at 5,364,525 to 5,365,880
_23925
AO356_23930: AO356_23930 - molecular chaperone Hsp20, at 5,366,212 to 5,366,751
_23930
AO356_23935: AO356_23935 - arginine-ornithine antiporter, at 5,366,840 to 5,368,333
_23935
AO356_23940: AO356_23940 - Crp/Fnr family transcriptional regulator, at 5,368,464 to 5,369,216
_23940
Position (kb) 5366
5367
5368
5369 Strain fitness (log2 ratio) -1
0
1
2 at 5365.988 kb on - strand at 5366.904 kb on - strand at 5366.967 kb on + strand at 5366.989 kb on - strand at 5367.012 kb on + strand, within AO356_23935 at 5367.049 kb on - strand, within AO356_23935 at 5367.109 kb on - strand, within AO356_23935 at 5367.141 kb on + strand, within AO356_23935 at 5367.142 kb on - strand, within AO356_23935 at 5367.142 kb on - strand, within AO356_23935 at 5367.159 kb on + strand, within AO356_23935 at 5367.205 kb on - strand, within AO356_23935 at 5367.410 kb on - strand, within AO356_23935 at 5367.452 kb on + strand, within AO356_23935 at 5367.519 kb on - strand, within AO356_23935 at 5367.519 kb on - strand, within AO356_23935 at 5367.611 kb on + strand, within AO356_23935 at 5367.919 kb on - strand, within AO356_23935 at 5367.981 kb on + strand, within AO356_23935 at 5368.313 kb on - strand at 5368.338 kb on + strand at 5368.338 kb on + strand at 5368.338 kb on + strand at 5368.339 kb on - strand at 5368.339 kb on - strand at 5368.339 kb on - strand at 5368.403 kb on - strand at 5368.437 kb on + strand at 5368.438 kb on - strand at 5368.526 kb on + strand at 5368.527 kb on - strand at 5368.527 kb on - strand at 5368.666 kb on + strand, within AO356_23940 at 5368.679 kb on + strand, within AO356_23940 at 5368.679 kb on + strand, within AO356_23940 at 5368.679 kb on + strand, within AO356_23940 at 5368.679 kb on + strand, within AO356_23940 at 5368.680 kb on - strand, within AO356_23940 at 5368.680 kb on - strand, within AO356_23940 at 5368.702 kb on - strand, within AO356_23940 at 5368.889 kb on + strand, within AO356_23940 at 5368.890 kb on - strand, within AO356_23940 at 5368.897 kb on + strand, within AO356_23940 at 5368.898 kb on - strand, within AO356_23940 at 5369.018 kb on - strand, within AO356_23940 at 5369.048 kb on - strand, within AO356_23940 at 5369.230 kb on - strand at 5369.231 kb on + strand at 5369.231 kb on + strand at 5369.232 kb on - strand at 5369.232 kb on - strand at 5369.246 kb on + strand at 5369.246 kb on + strand at 5369.246 kb on + strand at 5369.246 kb on + strand at 5369.246 kb on + strand at 5369.247 kb on - strand at 5369.247 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,365,988 - +0.1 5,366,904 - -0.6 5,366,967 + +0.4 5,366,989 - +0.9 5,367,012 + AO356_23935 0.12 -0.3 5,367,049 - AO356_23935 0.14 +0.5 5,367,109 - AO356_23935 0.18 -1.0 5,367,141 + AO356_23935 0.20 -0.8 5,367,142 - AO356_23935 0.20 +0.2 5,367,142 - AO356_23935 0.20 -0.2 5,367,159 + AO356_23935 0.21 +1.2 5,367,205 - AO356_23935 0.24 -0.0 5,367,410 - AO356_23935 0.38 +0.3 5,367,452 + AO356_23935 0.41 +0.2 5,367,519 - AO356_23935 0.45 +0.4 5,367,519 - AO356_23935 0.45 -1.0 5,367,611 + AO356_23935 0.52 -0.4 5,367,919 - AO356_23935 0.72 +0.2 5,367,981 + AO356_23935 0.76 -1.5 5,368,313 - -0.0 5,368,338 + +0.3 5,368,338 + -0.2 5,368,338 + -0.1 5,368,339 - -0.5 5,368,339 - +0.6 5,368,339 - +0.4 5,368,403 - +0.8 5,368,437 + +0.1 5,368,438 - -0.2 5,368,526 + +0.7 5,368,527 - +0.1 5,368,527 - -0.3 5,368,666 + AO356_23940 0.27 +1.3 5,368,679 + AO356_23940 0.29 +0.2 5,368,679 + AO356_23940 0.29 +0.6 5,368,679 + AO356_23940 0.29 -0.0 5,368,679 + AO356_23940 0.29 +1.2 5,368,680 - AO356_23940 0.29 -1.0 5,368,680 - AO356_23940 0.29 +0.5 5,368,702 - AO356_23940 0.32 +1.8 5,368,889 + AO356_23940 0.56 -1.4 5,368,890 - AO356_23940 0.57 +0.6 5,368,897 + AO356_23940 0.58 +0.4 5,368,898 - AO356_23940 0.58 +1.5 5,369,018 - AO356_23940 0.74 -0.0 5,369,048 - AO356_23940 0.78 +0.0 5,369,230 - -0.7 5,369,231 + +0.3 5,369,231 + +0.9 5,369,232 - -0.8 5,369,232 - +1.1 5,369,246 + +0.3 5,369,246 + -0.6 5,369,246 + +0.5 5,369,246 + +0.9 5,369,246 + +0.5 5,369,247 - +0.1 5,369,247 - +0.4
Or see this region's nucleotide sequence