Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_14025 and AO356_14030 are separated by 210 nucleotides AO356_14030 and AO356_14035 are separated by 70 nucleotides AO356_14035 and AO356_14040 overlap by 1 nucleotides
AO356_14025: AO356_14025 - acyltransferase, at 3,183,452 to 3,184,339
_14025
AO356_14030: AO356_14030 - ATP-dependent zinc protease, at 3,184,550 to 3,185,056
_14030
AO356_14035: AO356_14035 - transcriptional regulator, at 3,185,127 to 3,185,807
_14035
AO356_14040: AO356_14040 - histidine kinase, at 3,185,807 to 3,187,225
_14040
Position (kb)
3184
3185
3186 Strain fitness (log2 ratio)
-1
0
1
2 at 3183.924 kb on + strand, within AO356_14025 at 3183.942 kb on + strand, within AO356_14025 at 3183.942 kb on + strand, within AO356_14025 at 3184.059 kb on - strand, within AO356_14025 at 3184.059 kb on - strand, within AO356_14025 at 3184.089 kb on + strand, within AO356_14025 at 3184.089 kb on + strand, within AO356_14025 at 3184.089 kb on + strand, within AO356_14025 at 3184.090 kb on - strand, within AO356_14025 at 3184.090 kb on - strand, within AO356_14025 at 3184.090 kb on - strand, within AO356_14025 at 3184.090 kb on - strand, within AO356_14025 at 3184.096 kb on + strand, within AO356_14025 at 3184.097 kb on - strand, within AO356_14025 at 3184.215 kb on + strand, within AO356_14025 at 3184.339 kb on + strand at 3184.339 kb on + strand at 3184.340 kb on - strand at 3184.340 kb on - strand at 3184.340 kb on - strand at 3184.340 kb on - strand at 3184.374 kb on + strand at 3184.374 kb on + strand at 3184.374 kb on + strand at 3184.374 kb on + strand at 3184.374 kb on + strand at 3184.374 kb on + strand at 3184.374 kb on + strand at 3184.375 kb on - strand at 3184.375 kb on - strand at 3184.375 kb on - strand at 3184.375 kb on - strand at 3184.375 kb on - strand at 3184.375 kb on - strand at 3184.375 kb on - strand at 3184.375 kb on - strand at 3184.375 kb on - strand at 3184.434 kb on + strand at 3184.434 kb on + strand at 3184.434 kb on + strand at 3184.435 kb on - strand at 3184.435 kb on - strand at 3184.435 kb on - strand at 3184.489 kb on + strand at 3184.489 kb on + strand at 3184.489 kb on + strand at 3184.490 kb on - strand at 3184.490 kb on - strand at 3184.490 kb on - strand at 3184.490 kb on - strand at 3184.518 kb on + strand at 3184.518 kb on + strand at 3184.518 kb on + strand at 3184.519 kb on - strand at 3184.532 kb on + strand at 3184.532 kb on + strand at 3184.533 kb on - strand at 3184.626 kb on - strand, within AO356_14030 at 3184.626 kb on - strand, within AO356_14030 at 3184.631 kb on + strand, within AO356_14030 at 3184.631 kb on + strand, within AO356_14030 at 3184.631 kb on + strand, within AO356_14030 at 3184.631 kb on + strand, within AO356_14030 at 3184.632 kb on - strand, within AO356_14030 at 3184.632 kb on - strand, within AO356_14030 at 3184.632 kb on - strand, within AO356_14030 at 3184.632 kb on - strand, within AO356_14030 at 3184.793 kb on + strand, within AO356_14030 at 3184.794 kb on - strand, within AO356_14030 at 3184.794 kb on - strand, within AO356_14030 at 3184.964 kb on + strand, within AO356_14030 at 3185.107 kb on + strand at 3185.107 kb on + strand at 3185.108 kb on - strand at 3185.135 kb on + strand at 3185.135 kb on + strand at 3185.135 kb on + strand at 3185.136 kb on - strand at 3185.136 kb on - strand at 3185.244 kb on + strand, within AO356_14035 at 3185.245 kb on - strand, within AO356_14035 at 3185.392 kb on + strand, within AO356_14035 at 3185.392 kb on + strand, within AO356_14035 at 3185.392 kb on + strand, within AO356_14035 at 3185.393 kb on - strand, within AO356_14035 at 3185.393 kb on - strand, within AO356_14035 at 3185.418 kb on + strand, within AO356_14035 at 3185.500 kb on + strand, within AO356_14035 at 3185.554 kb on - strand, within AO356_14035 at 3185.554 kb on - strand, within AO356_14035 at 3185.554 kb on - strand, within AO356_14035 at 3185.554 kb on - strand, within AO356_14035 at 3185.781 kb on + strand at 3185.787 kb on + strand at 3185.788 kb on - strand at 3185.788 kb on - strand at 3185.788 kb on - strand at 3185.788 kb on - strand at 3185.837 kb on + strand at 3185.837 kb on + strand at 3185.837 kb on + strand at 3185.837 kb on + strand at 3185.837 kb on + strand at 3185.837 kb on + strand at 3185.837 kb on + strand at 3185.837 kb on + strand at 3185.837 kb on + strand at 3185.837 kb on + strand at 3185.837 kb on + strand at 3185.837 kb on + strand at 3185.837 kb on + strand at 3185.838 kb on - strand at 3185.838 kb on - strand at 3185.838 kb on - strand at 3185.838 kb on - strand at 3185.838 kb on - strand at 3185.838 kb on - strand at 3185.838 kb on - strand at 3185.838 kb on - strand at 3185.838 kb on - strand at 3185.838 kb on - strand at 3185.838 kb on - strand at 3185.848 kb on + strand at 3185.864 kb on + strand at 3185.865 kb on - strand at 3186.027 kb on - strand, within AO356_14040
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,183,924 + AO356_14025 0.53 -0.3 3,183,942 + AO356_14025 0.55 -0.3 3,183,942 + AO356_14025 0.55 +0.2 3,184,059 - AO356_14025 0.68 -0.8 3,184,059 - AO356_14025 0.68 -0.3 3,184,089 + AO356_14025 0.72 +0.1 3,184,089 + AO356_14025 0.72 -0.6 3,184,089 + AO356_14025 0.72 +1.1 3,184,090 - AO356_14025 0.72 +0.6 3,184,090 - AO356_14025 0.72 +1.4 3,184,090 - AO356_14025 0.72 +0.3 3,184,090 - AO356_14025 0.72 +1.2 3,184,096 + AO356_14025 0.73 -0.9 3,184,097 - AO356_14025 0.73 -0.0 3,184,215 + AO356_14025 0.86 -0.4 3,184,339 + +0.6 3,184,339 + +0.7 3,184,340 - -0.8 3,184,340 - -0.2 3,184,340 - +0.0 3,184,340 - +0.5 3,184,374 + +0.3 3,184,374 + +1.6 3,184,374 + +0.6 3,184,374 + +0.0 3,184,374 + -0.0 3,184,374 + -0.2 3,184,374 + -1.1 3,184,375 - +0.8 3,184,375 - +0.5 3,184,375 - +1.1 3,184,375 - +0.0 3,184,375 - +0.5 3,184,375 - -0.1 3,184,375 - +0.7 3,184,375 - +0.7 3,184,375 - +0.0 3,184,434 + +0.3 3,184,434 + +1.0 3,184,434 + +0.4 3,184,435 - -0.2 3,184,435 - -0.5 3,184,435 - +0.9 3,184,489 + -0.2 3,184,489 + +0.5 3,184,489 + +0.5 3,184,490 - +0.0 3,184,490 - +0.3 3,184,490 - +0.3 3,184,490 - -0.1 3,184,518 + +0.6 3,184,518 + -0.1 3,184,518 + -0.6 3,184,519 - +0.8 3,184,532 + -0.2 3,184,532 + -1.0 3,184,533 - -0.1 3,184,626 - AO356_14030 0.15 -0.4 3,184,626 - AO356_14030 0.15 +0.5 3,184,631 + AO356_14030 0.16 +1.1 3,184,631 + AO356_14030 0.16 +0.0 3,184,631 + AO356_14030 0.16 -0.3 3,184,631 + AO356_14030 0.16 -0.4 3,184,632 - AO356_14030 0.16 -0.7 3,184,632 - AO356_14030 0.16 -0.1 3,184,632 - AO356_14030 0.16 -0.2 3,184,632 - AO356_14030 0.16 +0.7 3,184,793 + AO356_14030 0.48 -0.1 3,184,794 - AO356_14030 0.48 +0.1 3,184,794 - AO356_14030 0.48 +0.2 3,184,964 + AO356_14030 0.82 +0.2 3,185,107 + -0.1 3,185,107 + +0.3 3,185,108 - +0.1 3,185,135 + +0.2 3,185,135 + +0.7 3,185,135 + -0.4 3,185,136 - +0.7 3,185,136 - -0.7 3,185,244 + AO356_14035 0.17 -0.2 3,185,245 - AO356_14035 0.17 +0.2 3,185,392 + AO356_14035 0.39 -0.6 3,185,392 + AO356_14035 0.39 -0.8 3,185,392 + AO356_14035 0.39 +0.4 3,185,393 - AO356_14035 0.39 -0.2 3,185,393 - AO356_14035 0.39 +0.0 3,185,418 + AO356_14035 0.43 +0.8 3,185,500 + AO356_14035 0.55 +0.4 3,185,554 - AO356_14035 0.63 -0.3 3,185,554 - AO356_14035 0.63 +0.6 3,185,554 - AO356_14035 0.63 +0.6 3,185,554 - AO356_14035 0.63 -0.4 3,185,781 + -0.6 3,185,787 + -1.1 3,185,788 - +0.1 3,185,788 - +0.4 3,185,788 - -0.0 3,185,788 - -1.2 3,185,837 + +0.1 3,185,837 + +0.4 3,185,837 + +2.0 3,185,837 + +0.3 3,185,837 + +0.6 3,185,837 + -1.4 3,185,837 + -0.2 3,185,837 + +0.2 3,185,837 + -0.7 3,185,837 + -0.3 3,185,837 + -0.2 3,185,837 + +0.4 3,185,837 + +0.5 3,185,838 - +0.1 3,185,838 - -0.1 3,185,838 - +0.9 3,185,838 - -0.0 3,185,838 - +0.2 3,185,838 - +0.6 3,185,838 - +0.2 3,185,838 - +0.0 3,185,838 - +0.2 3,185,838 - +0.9 3,185,838 - -0.2 3,185,848 + -0.1 3,185,864 + +0.0 3,185,865 - -0.2 3,186,027 - AO356_14040 0.16 -1.1
Or see this region's nucleotide sequence