Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_11540 and AO356_11545 are separated by 150 nucleotides AO356_11545 and AO356_11550 are separated by 186 nucleotides
AO356_11540: AO356_11540 - glutathione S-transferase, at 2,615,381 to 2,616,076
_11540
AO356_11545: AO356_11545 - transcriptional regulator, at 2,616,227 to 2,616,790
_11545
AO356_11550: AO356_11550 - diguanylate cyclase, at 2,616,977 to 2,618,101
_11550
Position (kb)
2616
2617 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2615.318 kb on + strand at 2615.318 kb on + strand at 2615.318 kb on + strand at 2615.318 kb on + strand at 2615.319 kb on - strand at 2615.332 kb on + strand at 2615.332 kb on + strand at 2615.333 kb on - strand at 2615.366 kb on + strand at 2615.367 kb on - strand at 2615.382 kb on + strand at 2615.383 kb on - strand at 2615.592 kb on + strand, within AO356_11540 at 2615.592 kb on + strand, within AO356_11540 at 2615.593 kb on - strand, within AO356_11540 at 2615.649 kb on + strand, within AO356_11540 at 2615.649 kb on + strand, within AO356_11540 at 2615.649 kb on + strand, within AO356_11540 at 2615.649 kb on + strand, within AO356_11540 at 2615.650 kb on - strand, within AO356_11540 at 2615.650 kb on - strand, within AO356_11540 at 2615.694 kb on + strand, within AO356_11540 at 2615.695 kb on - strand, within AO356_11540 at 2615.743 kb on + strand, within AO356_11540 at 2615.743 kb on + strand, within AO356_11540 at 2615.743 kb on + strand, within AO356_11540 at 2615.743 kb on + strand, within AO356_11540 at 2615.743 kb on + strand, within AO356_11540 at 2615.744 kb on - strand, within AO356_11540 at 2615.744 kb on - strand, within AO356_11540 at 2615.744 kb on - strand, within AO356_11540 at 2615.744 kb on - strand, within AO356_11540 at 2615.744 kb on - strand, within AO356_11540 at 2615.744 kb on - strand, within AO356_11540 at 2615.744 kb on - strand, within AO356_11540 at 2615.744 kb on - strand, within AO356_11540 at 2615.811 kb on + strand, within AO356_11540 at 2615.812 kb on - strand, within AO356_11540 at 2615.812 kb on - strand, within AO356_11540 at 2615.812 kb on - strand, within AO356_11540 at 2615.812 kb on - strand, within AO356_11540 at 2615.883 kb on + strand, within AO356_11540 at 2615.883 kb on + strand, within AO356_11540 at 2615.883 kb on + strand, within AO356_11540 at 2615.883 kb on + strand, within AO356_11540 at 2616.021 kb on + strand at 2616.021 kb on + strand at 2616.021 kb on + strand at 2616.022 kb on - strand at 2616.034 kb on + strand at 2616.034 kb on + strand at 2616.034 kb on + strand at 2616.034 kb on + strand at 2616.034 kb on + strand at 2616.034 kb on + strand at 2616.035 kb on - strand at 2616.035 kb on - strand at 2616.035 kb on - strand at 2616.127 kb on + strand at 2616.127 kb on + strand at 2616.178 kb on + strand at 2616.178 kb on + strand at 2616.179 kb on - strand at 2616.191 kb on - strand at 2616.298 kb on + strand, within AO356_11545 at 2616.350 kb on + strand, within AO356_11545 at 2616.350 kb on + strand, within AO356_11545 at 2616.350 kb on + strand, within AO356_11545 at 2616.350 kb on + strand, within AO356_11545 at 2616.350 kb on + strand, within AO356_11545 at 2616.350 kb on + strand, within AO356_11545 at 2616.350 kb on + strand, within AO356_11545 at 2616.351 kb on - strand, within AO356_11545 at 2616.351 kb on - strand, within AO356_11545 at 2616.351 kb on - strand, within AO356_11545 at 2616.351 kb on - strand, within AO356_11545 at 2616.351 kb on - strand, within AO356_11545 at 2616.351 kb on - strand, within AO356_11545 at 2616.353 kb on + strand, within AO356_11545 at 2616.353 kb on + strand, within AO356_11545 at 2616.354 kb on - strand, within AO356_11545 at 2616.354 kb on - strand, within AO356_11545 at 2616.401 kb on + strand, within AO356_11545 at 2616.468 kb on + strand, within AO356_11545 at 2616.468 kb on + strand, within AO356_11545 at 2616.468 kb on + strand, within AO356_11545 at 2616.468 kb on + strand, within AO356_11545 at 2616.468 kb on + strand, within AO356_11545 at 2616.468 kb on + strand, within AO356_11545 at 2616.468 kb on + strand, within AO356_11545 at 2616.469 kb on - strand, within AO356_11545 at 2616.469 kb on - strand, within AO356_11545 at 2616.469 kb on - strand, within AO356_11545 at 2616.469 kb on - strand, within AO356_11545 at 2616.469 kb on - strand, within AO356_11545 at 2616.476 kb on + strand, within AO356_11545 at 2616.548 kb on + strand, within AO356_11545 at 2616.549 kb on - strand, within AO356_11545 at 2616.549 kb on - strand, within AO356_11545 at 2616.625 kb on - strand, within AO356_11545 at 2616.625 kb on - strand, within AO356_11545 at 2616.625 kb on - strand, within AO356_11545 at 2616.646 kb on + strand, within AO356_11545 at 2616.647 kb on - strand, within AO356_11545 at 2616.647 kb on - strand, within AO356_11545 at 2616.683 kb on + strand, within AO356_11545 at 2616.683 kb on + strand, within AO356_11545 at 2616.684 kb on - strand, within AO356_11545 at 2616.684 kb on - strand, within AO356_11545 at 2616.684 kb on - strand, within AO356_11545 at 2616.684 kb on - strand, within AO356_11545 at 2616.684 kb on - strand, within AO356_11545 at 2616.684 kb on - strand, within AO356_11545 at 2616.684 kb on - strand, within AO356_11545 at 2616.684 kb on - strand, within AO356_11545 at 2616.684 kb on - strand, within AO356_11545 at 2616.709 kb on - strand, within AO356_11545 at 2616.709 kb on - strand, within AO356_11545 at 2616.761 kb on + strand at 2616.796 kb on + strand at 2616.796 kb on + strand at 2616.796 kb on + strand at 2616.822 kb on + strand at 2616.823 kb on - strand at 2616.823 kb on - strand at 2616.823 kb on - strand at 2616.823 kb on - strand at 2616.904 kb on + strand at 2616.904 kb on + strand at 2616.904 kb on + strand at 2616.904 kb on + strand at 2616.904 kb on + strand at 2616.904 kb on + strand at 2616.905 kb on - strand at 2616.905 kb on - strand at 2616.905 kb on - strand at 2616.905 kb on - strand at 2616.905 kb on - strand at 2616.950 kb on + strand at 2616.950 kb on + strand at 2616.950 kb on + strand at 2617.018 kb on - strand at 2617.088 kb on + strand at 2617.088 kb on + strand at 2617.088 kb on + strand at 2617.088 kb on + strand at 2617.088 kb on + strand at 2617.088 kb on + strand at 2617.088 kb on + strand at 2617.089 kb on - strand at 2617.089 kb on - strand at 2617.089 kb on - strand at 2617.089 kb on - strand at 2617.089 kb on - strand at 2617.144 kb on + strand, within AO356_11550 at 2617.144 kb on + strand, within AO356_11550 at 2617.145 kb on - strand, within AO356_11550 at 2617.145 kb on - strand, within AO356_11550 at 2617.189 kb on + strand, within AO356_11550 at 2617.189 kb on + strand, within AO356_11550 at 2617.209 kb on - strand, within AO356_11550 at 2617.209 kb on - strand, within AO356_11550 at 2617.234 kb on + strand, within AO356_11550 at 2617.234 kb on + strand, within AO356_11550 at 2617.234 kb on + strand, within AO356_11550 at 2617.234 kb on + strand, within AO356_11550 at 2617.234 kb on + strand, within AO356_11550 at 2617.234 kb on + strand, within AO356_11550 at 2617.235 kb on - strand, within AO356_11550 at 2617.235 kb on - strand, within AO356_11550 at 2617.279 kb on - strand, within AO356_11550 at 2617.361 kb on - strand, within AO356_11550 at 2617.395 kb on - strand, within AO356_11550 at 2617.403 kb on + strand, within AO356_11550 at 2617.404 kb on - strand, within AO356_11550 at 2617.411 kb on + strand, within AO356_11550 at 2617.579 kb on + strand, within AO356_11550 at 2617.579 kb on + strand, within AO356_11550 at 2617.688 kb on + strand, within AO356_11550 at 2617.688 kb on + strand, within AO356_11550 at 2617.688 kb on + strand, within AO356_11550 at 2617.688 kb on + strand, within AO356_11550 at 2617.688 kb on + strand, within AO356_11550 at 2617.689 kb on - strand, within AO356_11550 at 2617.689 kb on - strand, within AO356_11550 at 2617.689 kb on - strand, within AO356_11550 at 2617.689 kb on - strand, within AO356_11550 at 2617.689 kb on - strand, within AO356_11550 at 2617.769 kb on + strand, within AO356_11550 at 2617.769 kb on + strand, within AO356_11550 at 2617.769 kb on + strand, within AO356_11550 at 2617.769 kb on + strand, within AO356_11550 at 2617.769 kb on + strand, within AO356_11550 at 2617.769 kb on + strand, within AO356_11550 at 2617.769 kb on + strand, within AO356_11550 at 2617.769 kb on + strand, within AO356_11550 at 2617.769 kb on + strand, within AO356_11550 at 2617.769 kb on + strand, within AO356_11550 at 2617.769 kb on + strand, within AO356_11550 at 2617.769 kb on + strand, within AO356_11550 at 2617.769 kb on + strand, within AO356_11550 at 2617.769 kb on + strand, within AO356_11550 at 2617.769 kb on + strand, within AO356_11550 at 2617.769 kb on + strand, within AO356_11550 at 2617.769 kb on + strand, within AO356_11550 at 2617.769 kb on + strand, within AO356_11550 at 2617.769 kb on + strand, within AO356_11550 at 2617.769 kb on + strand, within AO356_11550 at 2617.769 kb on + strand, within AO356_11550 at 2617.769 kb on + strand, within AO356_11550 at 2617.769 kb on + strand, within AO356_11550 at 2617.770 kb on - strand, within AO356_11550 at 2617.770 kb on - strand, within AO356_11550 at 2617.770 kb on - strand, within AO356_11550 at 2617.770 kb on - strand, within AO356_11550 at 2617.770 kb on - strand, within AO356_11550 at 2617.770 kb on - strand, within AO356_11550 at 2617.770 kb on - strand, within AO356_11550 at 2617.770 kb on - strand, within AO356_11550 at 2617.770 kb on - strand, within AO356_11550 at 2617.770 kb on - strand, within AO356_11550 at 2617.770 kb on - strand, within AO356_11550 at 2617.770 kb on - strand, within AO356_11550 at 2617.770 kb on - strand, within AO356_11550 at 2617.770 kb on - strand, within AO356_11550 at 2617.770 kb on - strand, within AO356_11550
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,615,318 + +0.5 2,615,318 + +0.6 2,615,318 + +0.2 2,615,318 + +0.7 2,615,319 - -1.3 2,615,332 + +0.5 2,615,332 + -0.1 2,615,333 - +0.7 2,615,366 + -0.1 2,615,367 - -0.5 2,615,382 + +0.6 2,615,383 - -0.2 2,615,592 + AO356_11540 0.30 -0.2 2,615,592 + AO356_11540 0.30 +0.8 2,615,593 - AO356_11540 0.30 -1.0 2,615,649 + AO356_11540 0.39 +0.3 2,615,649 + AO356_11540 0.39 -0.0 2,615,649 + AO356_11540 0.39 +1.1 2,615,649 + AO356_11540 0.39 -0.6 2,615,650 - AO356_11540 0.39 -1.0 2,615,650 - AO356_11540 0.39 -0.5 2,615,694 + AO356_11540 0.45 -0.1 2,615,695 - AO356_11540 0.45 +0.0 2,615,743 + AO356_11540 0.52 +0.5 2,615,743 + AO356_11540 0.52 +0.3 2,615,743 + AO356_11540 0.52 +0.3 2,615,743 + AO356_11540 0.52 -0.6 2,615,743 + AO356_11540 0.52 +0.1 2,615,744 - AO356_11540 0.52 +0.6 2,615,744 - AO356_11540 0.52 -0.3 2,615,744 - AO356_11540 0.52 +1.0 2,615,744 - AO356_11540 0.52 -0.2 2,615,744 - AO356_11540 0.52 +0.2 2,615,744 - AO356_11540 0.52 +0.3 2,615,744 - AO356_11540 0.52 -0.4 2,615,744 - AO356_11540 0.52 -0.6 2,615,811 + AO356_11540 0.62 +0.2 2,615,812 - AO356_11540 0.62 +0.2 2,615,812 - AO356_11540 0.62 -0.5 2,615,812 - AO356_11540 0.62 +0.5 2,615,812 - AO356_11540 0.62 +0.2 2,615,883 + AO356_11540 0.72 +0.2 2,615,883 + AO356_11540 0.72 -0.3 2,615,883 + AO356_11540 0.72 -0.3 2,615,883 + AO356_11540 0.72 +0.8 2,616,021 + +0.6 2,616,021 + +0.7 2,616,021 + -0.1 2,616,022 - +0.2 2,616,034 + +1.1 2,616,034 + +0.6 2,616,034 + +1.1 2,616,034 + -0.3 2,616,034 + +1.5 2,616,034 + -1.2 2,616,035 - -0.9 2,616,035 - -0.4 2,616,035 - +0.1 2,616,127 + -0.0 2,616,127 + -0.4 2,616,178 + +0.2 2,616,178 + +0.0 2,616,179 - +0.9 2,616,191 - +0.7 2,616,298 + AO356_11545 0.13 -1.4 2,616,350 + AO356_11545 0.22 -1.3 2,616,350 + AO356_11545 0.22 -0.4 2,616,350 + AO356_11545 0.22 -0.6 2,616,350 + AO356_11545 0.22 +0.2 2,616,350 + AO356_11545 0.22 +2.0 2,616,350 + AO356_11545 0.22 -0.4 2,616,350 + AO356_11545 0.22 -0.0 2,616,351 - AO356_11545 0.22 +0.5 2,616,351 - AO356_11545 0.22 -0.3 2,616,351 - AO356_11545 0.22 +1.3 2,616,351 - AO356_11545 0.22 +0.6 2,616,351 - AO356_11545 0.22 +0.4 2,616,351 - AO356_11545 0.22 -0.8 2,616,353 + AO356_11545 0.22 -0.1 2,616,353 + AO356_11545 0.22 +1.2 2,616,354 - AO356_11545 0.23 -0.1 2,616,354 - AO356_11545 0.23 -0.6 2,616,401 + AO356_11545 0.31 -0.0 2,616,468 + AO356_11545 0.43 -0.5 2,616,468 + AO356_11545 0.43 +0.2 2,616,468 + AO356_11545 0.43 -0.2 2,616,468 + AO356_11545 0.43 -0.1 2,616,468 + AO356_11545 0.43 -0.6 2,616,468 + AO356_11545 0.43 -0.8 2,616,468 + AO356_11545 0.43 -0.1 2,616,469 - AO356_11545 0.43 -0.8 2,616,469 - AO356_11545 0.43 -0.1 2,616,469 - AO356_11545 0.43 -0.7 2,616,469 - AO356_11545 0.43 +0.5 2,616,469 - AO356_11545 0.43 -0.1 2,616,476 + AO356_11545 0.44 -0.2 2,616,548 + AO356_11545 0.57 -0.5 2,616,549 - AO356_11545 0.57 +0.4 2,616,549 - AO356_11545 0.57 +0.3 2,616,625 - AO356_11545 0.71 -0.9 2,616,625 - AO356_11545 0.71 +0.1 2,616,625 - AO356_11545 0.71 -0.9 2,616,646 + AO356_11545 0.74 -0.5 2,616,647 - AO356_11545 0.74 +0.7 2,616,647 - AO356_11545 0.74 -0.4 2,616,683 + AO356_11545 0.81 +1.4 2,616,683 + AO356_11545 0.81 -1.0 2,616,684 - AO356_11545 0.81 -0.5 2,616,684 - AO356_11545 0.81 -0.1 2,616,684 - AO356_11545 0.81 +1.0 2,616,684 - AO356_11545 0.81 +0.4 2,616,684 - AO356_11545 0.81 -0.5 2,616,684 - AO356_11545 0.81 +0.7 2,616,684 - AO356_11545 0.81 -0.3 2,616,684 - AO356_11545 0.81 -1.0 2,616,684 - AO356_11545 0.81 -1.4 2,616,709 - AO356_11545 0.85 +0.7 2,616,709 - AO356_11545 0.85 +1.1 2,616,761 + +0.8 2,616,796 + +0.4 2,616,796 + +0.7 2,616,796 + +0.2 2,616,822 + +1.0 2,616,823 - -0.6 2,616,823 - +0.0 2,616,823 - -0.0 2,616,823 - +0.6 2,616,904 + +0.4 2,616,904 + +0.7 2,616,904 + +0.2 2,616,904 + -0.0 2,616,904 + -0.1 2,616,904 + -0.6 2,616,905 - -0.3 2,616,905 - -0.1 2,616,905 - +0.2 2,616,905 - -0.3 2,616,905 - -0.6 2,616,950 + -0.5 2,616,950 + +0.9 2,616,950 + +0.4 2,617,018 - +0.2 2,617,088 + +0.3 2,617,088 + -0.1 2,617,088 + -0.6 2,617,088 + +0.4 2,617,088 + +0.0 2,617,088 + +0.7 2,617,088 + -0.0 2,617,089 - +0.6 2,617,089 - -0.3 2,617,089 - -0.7 2,617,089 - +0.5 2,617,089 - -0.5 2,617,144 + AO356_11550 0.15 +0.4 2,617,144 + AO356_11550 0.15 -0.1 2,617,145 - AO356_11550 0.15 +1.4 2,617,145 - AO356_11550 0.15 +0.2 2,617,189 + AO356_11550 0.19 +0.2 2,617,189 + AO356_11550 0.19 +0.7 2,617,209 - AO356_11550 0.21 -0.6 2,617,209 - AO356_11550 0.21 +1.4 2,617,234 + AO356_11550 0.23 +0.2 2,617,234 + AO356_11550 0.23 +0.3 2,617,234 + AO356_11550 0.23 +1.3 2,617,234 + AO356_11550 0.23 -0.5 2,617,234 + AO356_11550 0.23 +0.1 2,617,234 + AO356_11550 0.23 +0.2 2,617,235 - AO356_11550 0.23 +2.5 2,617,235 - AO356_11550 0.23 +0.3 2,617,279 - AO356_11550 0.27 +0.6 2,617,361 - AO356_11550 0.34 +0.5 2,617,395 - AO356_11550 0.37 +0.8 2,617,403 + AO356_11550 0.38 -0.5 2,617,404 - AO356_11550 0.38 -0.2 2,617,411 + AO356_11550 0.39 +0.1 2,617,579 + AO356_11550 0.54 +0.6 2,617,579 + AO356_11550 0.54 -0.4 2,617,688 + AO356_11550 0.63 +0.6 2,617,688 + AO356_11550 0.63 -0.5 2,617,688 + AO356_11550 0.63 +1.8 2,617,688 + AO356_11550 0.63 +0.1 2,617,688 + AO356_11550 0.63 +1.2 2,617,689 - AO356_11550 0.63 -0.3 2,617,689 - AO356_11550 0.63 -0.8 2,617,689 - AO356_11550 0.63 -0.1 2,617,689 - AO356_11550 0.63 +0.2 2,617,689 - AO356_11550 0.63 +0.4 2,617,769 + AO356_11550 0.70 +0.3 2,617,769 + AO356_11550 0.70 -1.6 2,617,769 + AO356_11550 0.70 -0.0 2,617,769 + AO356_11550 0.70 +0.5 2,617,769 + AO356_11550 0.70 +0.3 2,617,769 + AO356_11550 0.70 +0.3 2,617,769 + AO356_11550 0.70 -0.2 2,617,769 + AO356_11550 0.70 -1.0 2,617,769 + AO356_11550 0.70 -0.3 2,617,769 + AO356_11550 0.70 -0.0 2,617,769 + AO356_11550 0.70 -0.2 2,617,769 + AO356_11550 0.70 +1.3 2,617,769 + AO356_11550 0.70 -0.9 2,617,769 + AO356_11550 0.70 +0.4 2,617,769 + AO356_11550 0.70 +0.9 2,617,769 + AO356_11550 0.70 +1.0 2,617,769 + AO356_11550 0.70 -0.2 2,617,769 + AO356_11550 0.70 -0.2 2,617,769 + AO356_11550 0.70 +0.5 2,617,769 + AO356_11550 0.70 -0.0 2,617,769 + AO356_11550 0.70 -0.1 2,617,769 + AO356_11550 0.70 +0.5 2,617,769 + AO356_11550 0.70 +0.5 2,617,770 - AO356_11550 0.70 +0.2 2,617,770 - AO356_11550 0.70 +0.0 2,617,770 - AO356_11550 0.70 +2.9 2,617,770 - AO356_11550 0.70 +0.1 2,617,770 - AO356_11550 0.70 -0.7 2,617,770 - AO356_11550 0.70 +0.9 2,617,770 - AO356_11550 0.70 -0.3 2,617,770 - AO356_11550 0.70 +0.7 2,617,770 - AO356_11550 0.70 +0.6 2,617,770 - AO356_11550 0.70 +0.0 2,617,770 - AO356_11550 0.70 -0.2 2,617,770 - AO356_11550 0.70 -1.6 2,617,770 - AO356_11550 0.70 +1.0 2,617,770 - AO356_11550 0.70 +0.5 2,617,770 - AO356_11550 0.70 -0.1
Or see this region's nucleotide sequence