Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_06595 and AO356_06600 overlap by 1 nucleotides AO356_06600 and AO356_06605 are separated by 12 nucleotides AO356_06605 and AO356_06610 are separated by 28 nucleotides AO356_06610 and AO356_06615 are separated by 88 nucleotides AO356_06615 and AO356_06620 are separated by 13 nucleotides
AO356_06595: AO356_06595 - Cro/Cl family transcriptional regulator, at 1,461,156 to 1,462,184
_06595
AO356_06600: AO356_06600 - pilus assembly protein PilW, at 1,462,184 to 1,462,942
_06600
AO356_06605: AO356_06605 - 23S rRNA (adenine(2503)-C2)-methyltransferase, at 1,462,955 to 1,464,103
_06605
AO356_06610: AO356_06610 - nucleoside diphosphate kinase, at 1,464,132 to 1,464,557
_06610
AO356_06615: AO356_06615 - FeS assembly protein IscX, at 1,464,646 to 1,464,846
_06615
AO356_06620: AO356_06620 - 2Fe-2S ferredoxin, at 1,464,860 to 1,465,201
_06620
Position (kb)
1462
1463
1464
1465 Strain fitness (log2 ratio)
-2
-1
0
1 at 1462.201 kb on - strand at 1462.201 kb on - strand at 1462.201 kb on - strand at 1462.201 kb on - strand at 1462.210 kb on - strand at 1462.313 kb on - strand, within AO356_06600 at 1462.313 kb on - strand, within AO356_06600 at 1462.313 kb on - strand, within AO356_06600 at 1462.313 kb on - strand, within AO356_06600 at 1462.313 kb on - strand, within AO356_06600 at 1462.313 kb on - strand, within AO356_06600 at 1462.313 kb on - strand, within AO356_06600 at 1462.313 kb on - strand, within AO356_06600 at 1462.313 kb on - strand, within AO356_06600 at 1462.351 kb on - strand, within AO356_06600 at 1462.351 kb on - strand, within AO356_06600 at 1462.351 kb on - strand, within AO356_06600 at 1462.351 kb on - strand, within AO356_06600 at 1462.351 kb on - strand, within AO356_06600 at 1462.351 kb on - strand, within AO356_06600 at 1462.351 kb on - strand, within AO356_06600 at 1462.354 kb on - strand, within AO356_06600 at 1462.372 kb on - strand, within AO356_06600 at 1462.372 kb on - strand, within AO356_06600 at 1462.372 kb on - strand, within AO356_06600 at 1462.372 kb on - strand, within AO356_06600 at 1462.372 kb on - strand, within AO356_06600 at 1462.372 kb on - strand, within AO356_06600 at 1462.372 kb on - strand, within AO356_06600 at 1462.372 kb on - strand, within AO356_06600 at 1462.372 kb on - strand, within AO356_06600 at 1462.372 kb on - strand, within AO356_06600 at 1462.372 kb on - strand, within AO356_06600 at 1462.534 kb on - strand, within AO356_06600 at 1462.570 kb on - strand, within AO356_06600 at 1462.570 kb on - strand, within AO356_06600 at 1462.612 kb on - strand, within AO356_06600 at 1462.825 kb on - strand, within AO356_06600 at 1462.825 kb on - strand, within AO356_06600 at 1462.873 kb on - strand at 1462.873 kb on - strand at 1462.873 kb on - strand at 1462.873 kb on - strand at 1462.873 kb on - strand at 1462.873 kb on - strand at 1462.873 kb on - strand at 1462.943 kb on - strand at 1462.943 kb on - strand at 1462.943 kb on - strand at 1462.957 kb on - strand at 1462.957 kb on - strand at 1463.020 kb on - strand at 1463.020 kb on - strand at 1463.020 kb on - strand at 1463.020 kb on - strand at 1463.299 kb on - strand, within AO356_06605 at 1463.341 kb on - strand, within AO356_06605 at 1463.341 kb on - strand, within AO356_06605 at 1463.341 kb on - strand, within AO356_06605 at 1463.341 kb on - strand, within AO356_06605 at 1463.369 kb on - strand, within AO356_06605 at 1463.369 kb on - strand, within AO356_06605 at 1463.711 kb on - strand, within AO356_06605 at 1464.145 kb on - strand at 1464.145 kb on - strand at 1464.145 kb on - strand at 1464.606 kb on - strand at 1464.624 kb on - strand at 1464.715 kb on - strand, within AO356_06615 at 1464.839 kb on + strand at 1464.839 kb on + strand at 1464.840 kb on - strand at 1464.840 kb on - strand at 1464.840 kb on - strand at 1464.840 kb on - strand at 1464.840 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,462,201 - +1.3 1,462,201 - +0.5 1,462,201 - -0.4 1,462,201 - -0.1 1,462,210 - -0.1 1,462,313 - AO356_06600 0.17 +0.0 1,462,313 - AO356_06600 0.17 -0.3 1,462,313 - AO356_06600 0.17 +0.1 1,462,313 - AO356_06600 0.17 +1.7 1,462,313 - AO356_06600 0.17 -1.5 1,462,313 - AO356_06600 0.17 -0.6 1,462,313 - AO356_06600 0.17 +0.2 1,462,313 - AO356_06600 0.17 -0.9 1,462,313 - AO356_06600 0.17 -0.9 1,462,351 - AO356_06600 0.22 +0.7 1,462,351 - AO356_06600 0.22 -0.5 1,462,351 - AO356_06600 0.22 +0.1 1,462,351 - AO356_06600 0.22 +0.3 1,462,351 - AO356_06600 0.22 +0.3 1,462,351 - AO356_06600 0.22 -0.3 1,462,351 - AO356_06600 0.22 +0.1 1,462,354 - AO356_06600 0.22 +0.4 1,462,372 - AO356_06600 0.25 -0.2 1,462,372 - AO356_06600 0.25 -0.3 1,462,372 - AO356_06600 0.25 -0.1 1,462,372 - AO356_06600 0.25 -0.3 1,462,372 - AO356_06600 0.25 +0.3 1,462,372 - AO356_06600 0.25 -0.5 1,462,372 - AO356_06600 0.25 -0.5 1,462,372 - AO356_06600 0.25 -0.7 1,462,372 - AO356_06600 0.25 +0.2 1,462,372 - AO356_06600 0.25 -0.4 1,462,372 - AO356_06600 0.25 +0.3 1,462,534 - AO356_06600 0.46 -0.7 1,462,570 - AO356_06600 0.51 +0.1 1,462,570 - AO356_06600 0.51 +0.5 1,462,612 - AO356_06600 0.56 +0.3 1,462,825 - AO356_06600 0.84 -0.7 1,462,825 - AO356_06600 0.84 +0.2 1,462,873 - +0.3 1,462,873 - +0.5 1,462,873 - -1.1 1,462,873 - +0.6 1,462,873 - -0.4 1,462,873 - -0.1 1,462,873 - +0.4 1,462,943 - -0.2 1,462,943 - -2.0 1,462,943 - +0.2 1,462,957 - +0.2 1,462,957 - +0.4 1,463,020 - -0.5 1,463,020 - +0.5 1,463,020 - -0.6 1,463,020 - -0.3 1,463,299 - AO356_06605 0.30 +0.3 1,463,341 - AO356_06605 0.34 +1.0 1,463,341 - AO356_06605 0.34 +1.2 1,463,341 - AO356_06605 0.34 +0.2 1,463,341 - AO356_06605 0.34 -0.6 1,463,369 - AO356_06605 0.36 -0.6 1,463,369 - AO356_06605 0.36 +1.7 1,463,711 - AO356_06605 0.66 +1.3 1,464,145 - -0.4 1,464,145 - +0.5 1,464,145 - -1.3 1,464,606 - -0.0 1,464,624 - +0.4 1,464,715 - AO356_06615 0.34 +0.2 1,464,839 + +0.1 1,464,839 + -0.2 1,464,840 - -0.4 1,464,840 - -1.1 1,464,840 - +0.7 1,464,840 - +1.0 1,464,840 - +0.0
Or see this region's nucleotide sequence