Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06605

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_06595 and AO356_06600 overlap by 1 nucleotidesAO356_06600 and AO356_06605 are separated by 12 nucleotidesAO356_06605 and AO356_06610 are separated by 28 nucleotidesAO356_06610 and AO356_06615 are separated by 88 nucleotidesAO356_06615 and AO356_06620 are separated by 13 nucleotides AO356_06595: AO356_06595 - Cro/Cl family transcriptional regulator, at 1,461,156 to 1,462,184 _06595 AO356_06600: AO356_06600 - pilus assembly protein PilW, at 1,462,184 to 1,462,942 _06600 AO356_06605: AO356_06605 - 23S rRNA (adenine(2503)-C2)-methyltransferase, at 1,462,955 to 1,464,103 _06605 AO356_06610: AO356_06610 - nucleoside diphosphate kinase, at 1,464,132 to 1,464,557 _06610 AO356_06615: AO356_06615 - FeS assembly protein IscX, at 1,464,646 to 1,464,846 _06615 AO356_06620: AO356_06620 - 2Fe-2S ferredoxin, at 1,464,860 to 1,465,201 _06620 Position (kb) 1462 1463 1464 1465Strain fitness (log2 ratio) -2 -1 0 1at 1462.201 kb on - strandat 1462.201 kb on - strandat 1462.201 kb on - strandat 1462.201 kb on - strandat 1462.210 kb on - strandat 1462.313 kb on - strand, within AO356_06600at 1462.313 kb on - strand, within AO356_06600at 1462.313 kb on - strand, within AO356_06600at 1462.313 kb on - strand, within AO356_06600at 1462.313 kb on - strand, within AO356_06600at 1462.313 kb on - strand, within AO356_06600at 1462.313 kb on - strand, within AO356_06600at 1462.313 kb on - strand, within AO356_06600at 1462.313 kb on - strand, within AO356_06600at 1462.351 kb on - strand, within AO356_06600at 1462.351 kb on - strand, within AO356_06600at 1462.351 kb on - strand, within AO356_06600at 1462.351 kb on - strand, within AO356_06600at 1462.351 kb on - strand, within AO356_06600at 1462.351 kb on - strand, within AO356_06600at 1462.351 kb on - strand, within AO356_06600at 1462.354 kb on - strand, within AO356_06600at 1462.372 kb on - strand, within AO356_06600at 1462.372 kb on - strand, within AO356_06600at 1462.372 kb on - strand, within AO356_06600at 1462.372 kb on - strand, within AO356_06600at 1462.372 kb on - strand, within AO356_06600at 1462.372 kb on - strand, within AO356_06600at 1462.372 kb on - strand, within AO356_06600at 1462.372 kb on - strand, within AO356_06600at 1462.372 kb on - strand, within AO356_06600at 1462.372 kb on - strand, within AO356_06600at 1462.372 kb on - strand, within AO356_06600at 1462.534 kb on - strand, within AO356_06600at 1462.570 kb on - strand, within AO356_06600at 1462.570 kb on - strand, within AO356_06600at 1462.612 kb on - strand, within AO356_06600at 1462.825 kb on - strand, within AO356_06600at 1462.825 kb on - strand, within AO356_06600at 1462.873 kb on - strandat 1462.873 kb on - strandat 1462.873 kb on - strandat 1462.873 kb on - strandat 1462.873 kb on - strandat 1462.873 kb on - strandat 1462.873 kb on - strandat 1462.943 kb on - strandat 1462.943 kb on - strandat 1462.943 kb on - strandat 1462.957 kb on - strandat 1462.957 kb on - strandat 1463.020 kb on - strandat 1463.020 kb on - strandat 1463.020 kb on - strandat 1463.020 kb on - strandat 1463.299 kb on - strand, within AO356_06605at 1463.341 kb on - strand, within AO356_06605at 1463.341 kb on - strand, within AO356_06605at 1463.341 kb on - strand, within AO356_06605at 1463.341 kb on - strand, within AO356_06605at 1463.369 kb on - strand, within AO356_06605at 1463.369 kb on - strand, within AO356_06605at 1463.711 kb on - strand, within AO356_06605at 1464.145 kb on - strandat 1464.145 kb on - strandat 1464.145 kb on - strandat 1464.606 kb on - strandat 1464.624 kb on - strandat 1464.715 kb on - strand, within AO356_06615at 1464.839 kb on + strandat 1464.839 kb on + strandat 1464.840 kb on - strandat 1464.840 kb on - strandat 1464.840 kb on - strandat 1464.840 kb on - strandat 1464.840 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
1,462,201 - +1.3
1,462,201 - +0.5
1,462,201 - -0.4
1,462,201 - -0.1
1,462,210 - -0.1
1,462,313 - AO356_06600 0.17 +0.0
1,462,313 - AO356_06600 0.17 -0.3
1,462,313 - AO356_06600 0.17 +0.1
1,462,313 - AO356_06600 0.17 +1.7
1,462,313 - AO356_06600 0.17 -1.5
1,462,313 - AO356_06600 0.17 -0.6
1,462,313 - AO356_06600 0.17 +0.2
1,462,313 - AO356_06600 0.17 -0.9
1,462,313 - AO356_06600 0.17 -0.9
1,462,351 - AO356_06600 0.22 +0.7
1,462,351 - AO356_06600 0.22 -0.5
1,462,351 - AO356_06600 0.22 +0.1
1,462,351 - AO356_06600 0.22 +0.3
1,462,351 - AO356_06600 0.22 +0.3
1,462,351 - AO356_06600 0.22 -0.3
1,462,351 - AO356_06600 0.22 +0.1
1,462,354 - AO356_06600 0.22 +0.4
1,462,372 - AO356_06600 0.25 -0.2
1,462,372 - AO356_06600 0.25 -0.3
1,462,372 - AO356_06600 0.25 -0.1
1,462,372 - AO356_06600 0.25 -0.3
1,462,372 - AO356_06600 0.25 +0.3
1,462,372 - AO356_06600 0.25 -0.5
1,462,372 - AO356_06600 0.25 -0.5
1,462,372 - AO356_06600 0.25 -0.7
1,462,372 - AO356_06600 0.25 +0.2
1,462,372 - AO356_06600 0.25 -0.4
1,462,372 - AO356_06600 0.25 +0.3
1,462,534 - AO356_06600 0.46 -0.7
1,462,570 - AO356_06600 0.51 +0.1
1,462,570 - AO356_06600 0.51 +0.5
1,462,612 - AO356_06600 0.56 +0.3
1,462,825 - AO356_06600 0.84 -0.7
1,462,825 - AO356_06600 0.84 +0.2
1,462,873 - +0.3
1,462,873 - +0.5
1,462,873 - -1.1
1,462,873 - +0.6
1,462,873 - -0.4
1,462,873 - -0.1
1,462,873 - +0.4
1,462,943 - -0.2
1,462,943 - -2.0
1,462,943 - +0.2
1,462,957 - +0.2
1,462,957 - +0.4
1,463,020 - -0.5
1,463,020 - +0.5
1,463,020 - -0.6
1,463,020 - -0.3
1,463,299 - AO356_06605 0.30 +0.3
1,463,341 - AO356_06605 0.34 +1.0
1,463,341 - AO356_06605 0.34 +1.2
1,463,341 - AO356_06605 0.34 +0.2
1,463,341 - AO356_06605 0.34 -0.6
1,463,369 - AO356_06605 0.36 -0.6
1,463,369 - AO356_06605 0.36 +1.7
1,463,711 - AO356_06605 0.66 +1.3
1,464,145 - -0.4
1,464,145 - +0.5
1,464,145 - -1.3
1,464,606 - -0.0
1,464,624 - +0.4
1,464,715 - AO356_06615 0.34 +0.2
1,464,839 + +0.1
1,464,839 + -0.2
1,464,840 - -0.4
1,464,840 - -1.1
1,464,840 - +0.7
1,464,840 - +1.0
1,464,840 - +0.0

Or see this region's nucleotide sequence