Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03855

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03850 and AO356_03855 are separated by 110 nucleotidesAO356_03855 and AO356_03860 are separated by 169 nucleotidesAO356_03860 and AO356_03865 are separated by 11 nucleotides AO356_03850: AO356_03850 - histidine kinase, at 852,088 to 853,296 _03850 AO356_03855: AO356_03855 - AAA family ATPase, at 853,407 to 854,882 _03855 AO356_03860: AO356_03860 - flagellar assembly protein FliT, at 855,052 to 855,348 _03860 AO356_03865: AO356_03865 - flagellar export chaperone FliS, at 855,360 to 855,755 _03865 Position (kb) 853 854 855Strain fitness (log2 ratio) -2 -1 0 1 2at 852.680 kb on + strand, within AO356_03850at 852.681 kb on - strand, within AO356_03850at 852.681 kb on - strand, within AO356_03850at 852.705 kb on + strand, within AO356_03850at 852.705 kb on + strand, within AO356_03850at 852.706 kb on - strand, within AO356_03850at 853.163 kb on + strand, within AO356_03850at 853.163 kb on + strand, within AO356_03850at 853.164 kb on - strand, within AO356_03850at 853.164 kb on - strand, within AO356_03850at 853.327 kb on - strandat 853.349 kb on + strandat 853.349 kb on + strandat 853.450 kb on + strandat 853.451 kb on - strandat 853.451 kb on - strandat 853.451 kb on - strandat 853.451 kb on - strandat 853.451 kb on - strandat 853.573 kb on + strand, within AO356_03855at 853.574 kb on - strand, within AO356_03855at 853.631 kb on + strand, within AO356_03855at 853.631 kb on + strand, within AO356_03855at 853.631 kb on + strand, within AO356_03855at 853.631 kb on + strand, within AO356_03855at 853.631 kb on + strand, within AO356_03855at 853.632 kb on - strand, within AO356_03855at 853.709 kb on - strand, within AO356_03855at 853.972 kb on + strand, within AO356_03855at 853.972 kb on + strand, within AO356_03855at 853.972 kb on + strand, within AO356_03855at 853.972 kb on + strand, within AO356_03855at 853.972 kb on + strand, within AO356_03855at 853.972 kb on + strand, within AO356_03855at 853.973 kb on - strand, within AO356_03855at 853.973 kb on - strand, within AO356_03855at 853.973 kb on - strand, within AO356_03855at 854.163 kb on - strand, within AO356_03855at 854.317 kb on + strand, within AO356_03855at 854.317 kb on + strand, within AO356_03855at 854.318 kb on - strand, within AO356_03855at 854.318 kb on - strand, within AO356_03855at 854.318 kb on - strand, within AO356_03855at 854.318 kb on - strand, within AO356_03855at 854.500 kb on + strand, within AO356_03855at 854.500 kb on + strand, within AO356_03855at 854.501 kb on - strand, within AO356_03855at 854.501 kb on - strand, within AO356_03855at 854.501 kb on - strand, within AO356_03855at 854.501 kb on - strand, within AO356_03855at 854.501 kb on - strand, within AO356_03855at 854.501 kb on - strand, within AO356_03855at 854.551 kb on + strand, within AO356_03855at 854.673 kb on + strand, within AO356_03855at 854.674 kb on - strand, within AO356_03855at 854.703 kb on + strand, within AO356_03855at 854.703 kb on + strand, within AO356_03855at 854.703 kb on + strand, within AO356_03855at 854.703 kb on + strand, within AO356_03855at 854.704 kb on - strand, within AO356_03855at 854.704 kb on - strand, within AO356_03855at 854.704 kb on - strand, within AO356_03855at 854.704 kb on - strand, within AO356_03855at 854.704 kb on - strand, within AO356_03855at 854.787 kb on + strandat 854.788 kb on - strandat 854.843 kb on + strandat 854.887 kb on + strandat 854.887 kb on + strandat 854.887 kb on + strandat 854.887 kb on + strandat 854.888 kb on - strandat 854.888 kb on - strandat 854.899 kb on + strandat 854.900 kb on - strandat 854.933 kb on + strandat 854.934 kb on - strandat 854.934 kb on - strandat 854.934 kb on - strandat 854.961 kb on - strandat 854.961 kb on - strandat 854.969 kb on + strandat 854.970 kb on - strandat 854.977 kb on + strandat 854.986 kb on - strandat 854.988 kb on + strandat 854.988 kb on + strandat 854.988 kb on + strandat 854.989 kb on - strandat 854.989 kb on - strandat 854.989 kb on - strandat 854.989 kb on - strandat 854.989 kb on - strandat 854.993 kb on - strandat 854.993 kb on - strandat 854.993 kb on - strandat 854.993 kb on - strandat 855.042 kb on + strandat 855.043 kb on - strandat 855.068 kb on + strandat 855.069 kb on - strandat 855.069 kb on - strandat 855.361 kb on + strandat 855.362 kb on - strandat 855.487 kb on + strand, within AO356_03865at 855.487 kb on + strand, within AO356_03865at 855.487 kb on + strand, within AO356_03865at 855.487 kb on + strand, within AO356_03865at 855.487 kb on + strand, within AO356_03865at 855.487 kb on + strand, within AO356_03865at 855.487 kb on + strand, within AO356_03865at 855.487 kb on + strand, within AO356_03865at 855.487 kb on + strand, within AO356_03865at 855.488 kb on - strand, within AO356_03865at 855.488 kb on - strand, within AO356_03865at 855.488 kb on - strand, within AO356_03865at 855.488 kb on - strand, within AO356_03865at 855.488 kb on - strand, within AO356_03865at 855.493 kb on + strand, within AO356_03865at 855.494 kb on - strand, within AO356_03865at 855.605 kb on + strand, within AO356_03865at 855.605 kb on + strand, within AO356_03865at 855.641 kb on + strand, within AO356_03865at 855.641 kb on + strand, within AO356_03865at 855.642 kb on - strand, within AO356_03865at 855.672 kb on + strand, within AO356_03865at 855.672 kb on + strand, within AO356_03865at 855.672 kb on + strand, within AO356_03865at 855.672 kb on + strand, within AO356_03865at 855.672 kb on + strand, within AO356_03865at 855.672 kb on + strand, within AO356_03865at 855.672 kb on + strand, within AO356_03865at 855.673 kb on - strand, within AO356_03865at 855.673 kb on - strand, within AO356_03865at 855.673 kb on - strand, within AO356_03865at 855.673 kb on - strand, within AO356_03865at 855.673 kb on - strand, within AO356_03865at 855.673 kb on - strand, within AO356_03865at 855.673 kb on - strand, within AO356_03865at 855.673 kb on - strand, within AO356_03865at 855.673 kb on - strand, within AO356_03865at 855.742 kb on - strandat 855.760 kb on + strandat 855.760 kb on + strandat 855.760 kb on + strandat 855.760 kb on + strandat 855.760 kb on + strandat 855.760 kb on + strandat 855.761 kb on - strandat 855.761 kb on - strandat 855.761 kb on - strandat 855.785 kb on + strandat 855.785 kb on + strandat 855.786 kb on - strandat 855.786 kb on - strandat 855.786 kb on - strandat 855.786 kb on - strandat 855.786 kb on - strandat 855.786 kb on - strandat 855.787 kb on + strandat 855.787 kb on + strandat 855.796 kb on + strandat 855.797 kb on - strandat 855.797 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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852,680 + AO356_03850 0.49 -0.1
852,681 - AO356_03850 0.49 +0.0
852,681 - AO356_03850 0.49 -0.1
852,705 + AO356_03850 0.51 -0.6
852,705 + AO356_03850 0.51 +0.0
852,706 - AO356_03850 0.51 +0.1
853,163 + AO356_03850 0.89 +0.3
853,163 + AO356_03850 0.89 +0.2
853,164 - AO356_03850 0.89 -0.3
853,164 - AO356_03850 0.89 +0.7
853,327 - +0.1
853,349 + +0.2
853,349 + -0.3
853,450 + +0.1
853,451 - +0.1
853,451 - +0.5
853,451 - +0.0
853,451 - +0.1
853,451 - +0.5
853,573 + AO356_03855 0.11 -0.3
853,574 - AO356_03855 0.11 +0.4
853,631 + AO356_03855 0.15 -0.1
853,631 + AO356_03855 0.15 +1.4
853,631 + AO356_03855 0.15 +1.3
853,631 + AO356_03855 0.15 +0.7
853,631 + AO356_03855 0.15 +0.5
853,632 - AO356_03855 0.15 +0.2
853,709 - AO356_03855 0.20 +0.6
853,972 + AO356_03855 0.38 +0.7
853,972 + AO356_03855 0.38 +0.1
853,972 + AO356_03855 0.38 +0.3
853,972 + AO356_03855 0.38 +0.1
853,972 + AO356_03855 0.38 +0.2
853,972 + AO356_03855 0.38 +0.3
853,973 - AO356_03855 0.38 +0.9
853,973 - AO356_03855 0.38 +0.2
853,973 - AO356_03855 0.38 +0.4
854,163 - AO356_03855 0.51 +0.6
854,317 + AO356_03855 0.62 +0.3
854,317 + AO356_03855 0.62 +1.2
854,318 - AO356_03855 0.62 +0.7
854,318 - AO356_03855 0.62 -0.1
854,318 - AO356_03855 0.62 +1.0
854,318 - AO356_03855 0.62 +0.9
854,500 + AO356_03855 0.74 +0.5
854,500 + AO356_03855 0.74 +0.8
854,501 - AO356_03855 0.74 -1.7
854,501 - AO356_03855 0.74 +0.9
854,501 - AO356_03855 0.74 -0.7
854,501 - AO356_03855 0.74 +0.6
854,501 - AO356_03855 0.74 +0.3
854,501 - AO356_03855 0.74 +0.9
854,551 + AO356_03855 0.78 +0.2
854,673 + AO356_03855 0.86 +0.1
854,674 - AO356_03855 0.86 +0.5
854,703 + AO356_03855 0.88 +0.5
854,703 + AO356_03855 0.88 +0.4
854,703 + AO356_03855 0.88 -0.4
854,703 + AO356_03855 0.88 +1.0
854,704 - AO356_03855 0.88 +1.0
854,704 - AO356_03855 0.88 +0.0
854,704 - AO356_03855 0.88 +0.9
854,704 - AO356_03855 0.88 +0.3
854,704 - AO356_03855 0.88 +0.6
854,787 + +1.2
854,788 - +0.9
854,843 + +0.3
854,887 + +0.3
854,887 + +0.3
854,887 + -0.6
854,887 + +0.1
854,888 - -0.7
854,888 - -0.4
854,899 + +1.4
854,900 - -0.1
854,933 + +0.4
854,934 - -1.2
854,934 - -0.5
854,934 - -0.2
854,961 - +0.6
854,961 - +1.4
854,969 + +0.1
854,970 - +0.0
854,977 + +0.7
854,986 - +0.1
854,988 + -0.0
854,988 + +1.2
854,988 + +0.9
854,989 - +0.1
854,989 - +0.6
854,989 - +2.3
854,989 - -0.6
854,989 - +0.7
854,993 - +1.7
854,993 - +0.4
854,993 - +0.2
854,993 - -0.3
855,042 + +0.3
855,043 - +0.2
855,068 + +0.3
855,069 - -0.2
855,069 - +1.3
855,361 + -0.5
855,362 - +0.8
855,487 + AO356_03865 0.32 +0.5
855,487 + AO356_03865 0.32 +0.4
855,487 + AO356_03865 0.32 +0.3
855,487 + AO356_03865 0.32 -0.4
855,487 + AO356_03865 0.32 -0.5
855,487 + AO356_03865 0.32 -0.6
855,487 + AO356_03865 0.32 -0.4
855,487 + AO356_03865 0.32 +0.6
855,487 + AO356_03865 0.32 +0.4
855,488 - AO356_03865 0.32 +1.7
855,488 - AO356_03865 0.32 +0.6
855,488 - AO356_03865 0.32 +0.7
855,488 - AO356_03865 0.32 +0.7
855,488 - AO356_03865 0.32 -1.7
855,493 + AO356_03865 0.34 -0.3
855,494 - AO356_03865 0.34 -1.0
855,605 + AO356_03865 0.62 -1.1
855,605 + AO356_03865 0.62 -0.6
855,641 + AO356_03865 0.71 -0.1
855,641 + AO356_03865 0.71 -0.6
855,642 - AO356_03865 0.71 -0.0
855,672 + AO356_03865 0.79 +0.2
855,672 + AO356_03865 0.79 +0.9
855,672 + AO356_03865 0.79 -0.2
855,672 + AO356_03865 0.79 +2.0
855,672 + AO356_03865 0.79 +0.4
855,672 + AO356_03865 0.79 -0.1
855,672 + AO356_03865 0.79 +1.8
855,673 - AO356_03865 0.79 -0.3
855,673 - AO356_03865 0.79 +0.8
855,673 - AO356_03865 0.79 +0.7
855,673 - AO356_03865 0.79 +0.8
855,673 - AO356_03865 0.79 -0.1
855,673 - AO356_03865 0.79 -1.1
855,673 - AO356_03865 0.79 +0.7
855,673 - AO356_03865 0.79 -0.4
855,673 - AO356_03865 0.79 -0.8
855,742 - +0.4
855,760 + -0.4
855,760 + -1.5
855,760 + -0.3
855,760 + -1.0
855,760 + +0.2
855,760 + +1.7
855,761 - +0.8
855,761 - +0.0
855,761 - -0.3
855,785 + -1.9
855,785 + +0.6
855,786 - +0.4
855,786 - +1.0
855,786 - -0.2
855,786 - +0.6
855,786 - +0.5
855,786 - +0.2
855,787 + -0.2
855,787 + -1.1
855,796 + +2.0
855,797 - +0.2
855,797 - +0.2

Or see this region's nucleotide sequence