Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03020 and AO356_03025 are separated by 337 nucleotides AO356_03025 and AO356_03030 are separated by 2 nucleotides AO356_03030 and AO356_03035 overlap by 4 nucleotides AO356_03035 and AO356_03040 are separated by 126 nucleotides
AO356_03020: AO356_03020 - ammonium transporter, at 673,155 to 674,363
_03020
AO356_03025: AO356_03025 - hypothetical protein, at 674,701 to 675,015
_03025
AO356_03030: AO356_03030 - hypothetical protein, at 675,018 to 675,407
_03030
AO356_03035: AO356_03035 - hypothetical protein, at 675,404 to 675,739
_03035
AO356_03040: AO356_03040 - deoxyguanosinetriphosphate triphosphohydrolase, at 675,866 to 677,194
_03040
Position (kb) 674
675
676 Strain fitness (log2 ratio) -1
0
1
2 at 674.024 kb on + strand, within AO356_03020 at 674.024 kb on + strand, within AO356_03020 at 674.093 kb on - strand, within AO356_03020 at 674.113 kb on - strand, within AO356_03020 at 674.170 kb on + strand, within AO356_03020 at 674.170 kb on + strand, within AO356_03020 at 674.171 kb on - strand, within AO356_03020 at 674.171 kb on - strand, within AO356_03020 at 674.316 kb on - strand at 674.316 kb on - strand at 674.482 kb on + strand at 674.482 kb on + strand at 674.483 kb on - strand at 674.483 kb on - strand at 674.532 kb on + strand at 674.533 kb on - strand at 674.597 kb on + strand at 674.597 kb on + strand at 674.597 kb on + strand at 674.598 kb on - strand at 674.598 kb on - strand at 674.598 kb on - strand at 674.626 kb on - strand at 674.662 kb on + strand at 674.662 kb on + strand at 674.663 kb on - strand at 674.686 kb on + strand at 674.915 kb on + strand, within AO356_03025 at 674.915 kb on + strand, within AO356_03025 at 674.916 kb on - strand, within AO356_03025 at 674.932 kb on + strand, within AO356_03025 at 674.932 kb on + strand, within AO356_03025 at 674.933 kb on - strand, within AO356_03025 at 674.933 kb on - strand, within AO356_03025 at 674.933 kb on - strand, within AO356_03025 at 674.933 kb on - strand, within AO356_03025 at 674.936 kb on + strand, within AO356_03025 at 674.936 kb on + strand, within AO356_03025 at 674.936 kb on + strand, within AO356_03025 at 674.936 kb on + strand, within AO356_03025 at 674.936 kb on + strand, within AO356_03025 at 674.937 kb on - strand, within AO356_03025 at 674.937 kb on - strand, within AO356_03025 at 674.937 kb on - strand, within AO356_03025 at 674.960 kb on + strand, within AO356_03025 at 674.961 kb on - strand, within AO356_03025 at 675.241 kb on + strand, within AO356_03030 at 675.252 kb on + strand, within AO356_03030 at 675.252 kb on + strand, within AO356_03030 at 675.253 kb on - strand, within AO356_03030 at 675.288 kb on + strand, within AO356_03030 at 675.289 kb on - strand, within AO356_03030 at 675.289 kb on - strand, within AO356_03030 at 675.289 kb on - strand, within AO356_03030 at 675.336 kb on + strand, within AO356_03030 at 675.336 kb on + strand, within AO356_03030 at 675.337 kb on - strand, within AO356_03030 at 675.337 kb on - strand, within AO356_03030 at 675.418 kb on + strand at 675.418 kb on + strand at 675.772 kb on + strand at 675.772 kb on + strand at 675.772 kb on + strand at 675.773 kb on - strand at 675.773 kb on - strand at 675.773 kb on - strand at 675.773 kb on - strand at 675.773 kb on - strand at 675.776 kb on + strand at 675.776 kb on + strand at 675.776 kb on + strand at 675.777 kb on - strand at 675.777 kb on - strand at 675.797 kb on + strand at 675.831 kb on + strand at 675.877 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 674,024 + AO356_03020 0.72 +0.5 674,024 + AO356_03020 0.72 +0.3 674,093 - AO356_03020 0.78 +0.6 674,113 - AO356_03020 0.79 -0.4 674,170 + AO356_03020 0.84 +0.5 674,170 + AO356_03020 0.84 -1.2 674,171 - AO356_03020 0.84 +0.1 674,171 - AO356_03020 0.84 -0.6 674,316 - -0.2 674,316 - +1.8 674,482 + +0.4 674,482 + -0.0 674,483 - +0.2 674,483 - +0.0 674,532 + +0.0 674,533 - +0.1 674,597 + -0.7 674,597 + +0.6 674,597 + -0.4 674,598 - +0.3 674,598 - +0.9 674,598 - +0.2 674,626 - +1.4 674,662 + +0.3 674,662 + -0.1 674,663 - -0.0 674,686 + -0.6 674,915 + AO356_03025 0.68 +0.5 674,915 + AO356_03025 0.68 +0.2 674,916 - AO356_03025 0.68 +0.9 674,932 + AO356_03025 0.73 +0.1 674,932 + AO356_03025 0.73 +0.4 674,933 - AO356_03025 0.74 +0.8 674,933 - AO356_03025 0.74 -0.3 674,933 - AO356_03025 0.74 +0.3 674,933 - AO356_03025 0.74 -0.7 674,936 + AO356_03025 0.75 +0.2 674,936 + AO356_03025 0.75 -0.1 674,936 + AO356_03025 0.75 +1.3 674,936 + AO356_03025 0.75 -0.5 674,936 + AO356_03025 0.75 -1.6 674,937 - AO356_03025 0.75 -1.4 674,937 - AO356_03025 0.75 +0.5 674,937 - AO356_03025 0.75 +0.1 674,960 + AO356_03025 0.82 -0.2 674,961 - AO356_03025 0.83 -0.3 675,241 + AO356_03030 0.57 -0.4 675,252 + AO356_03030 0.60 +0.2 675,252 + AO356_03030 0.60 +0.2 675,253 - AO356_03030 0.60 +0.3 675,288 + AO356_03030 0.69 -0.4 675,289 - AO356_03030 0.69 +0.3 675,289 - AO356_03030 0.69 +0.9 675,289 - AO356_03030 0.69 +0.8 675,336 + AO356_03030 0.82 +1.1 675,336 + AO356_03030 0.82 -0.3 675,337 - AO356_03030 0.82 +0.4 675,337 - AO356_03030 0.82 -1.7 675,418 + +0.2 675,418 + -1.5 675,772 + +0.7 675,772 + -0.1 675,772 + -0.2 675,773 - -0.1 675,773 - -0.3 675,773 - -0.7 675,773 - -1.2 675,773 - +1.3 675,776 + -0.2 675,776 + +1.1 675,776 + +0.6 675,777 - -0.2 675,777 - +0.4 675,797 + -1.4 675,831 + -1.0 675,877 + +0.2
Or see this region's nucleotide sequence