Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01945 and AO356_01950 overlap by 4 nucleotides AO356_01950 and AO356_01955 are separated by 80 nucleotides AO356_01955 and AO356_01960 are separated by 6 nucleotides
AO356_01945: AO356_01945 - hypothetical protein, at 433,721 to 433,999
_01945
AO356_01950: AO356_01950 - hypothetical protein, at 433,996 to 434,481
_01950
AO356_01955: AO356_01955 - hypothetical protein, at 434,562 to 435,134
_01955
AO356_01960: AO356_01960 - Presumed portal vertex protein, at 435,141 to 436,163
_01960
Position (kb) 433
434
435 Strain fitness (log2 ratio) -1
0
1
2 at 433.001 kb on + strand at 433.011 kb on - strand at 433.057 kb on - strand at 433.095 kb on + strand at 433.115 kb on + strand at 433.115 kb on + strand at 433.116 kb on - strand at 433.157 kb on - strand at 433.188 kb on + strand at 433.189 kb on - strand at 433.189 kb on - strand at 433.204 kb on + strand at 433.204 kb on + strand at 433.204 kb on + strand at 433.204 kb on + strand at 433.204 kb on + strand at 433.205 kb on - strand at 433.205 kb on - strand at 433.249 kb on + strand at 433.249 kb on + strand at 433.249 kb on + strand at 433.249 kb on + strand at 433.250 kb on - strand at 433.250 kb on - strand at 433.250 kb on - strand at 433.266 kb on - strand at 433.266 kb on - strand at 433.330 kb on + strand at 433.330 kb on + strand at 433.330 kb on + strand at 433.331 kb on - strand at 433.331 kb on - strand at 433.331 kb on - strand at 433.331 kb on - strand at 433.331 kb on - strand at 433.334 kb on + strand at 433.335 kb on - strand at 433.467 kb on + strand at 433.467 kb on + strand at 433.467 kb on + strand at 433.467 kb on + strand at 433.467 kb on + strand at 433.467 kb on + strand at 433.467 kb on + strand at 433.467 kb on + strand at 433.467 kb on + strand at 433.467 kb on + strand at 433.467 kb on + strand at 433.467 kb on + strand at 433.467 kb on + strand at 433.467 kb on + strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.468 kb on - strand at 433.487 kb on - strand at 433.487 kb on - strand at 433.487 kb on - strand at 433.500 kb on - strand at 433.523 kb on + strand at 433.560 kb on + strand at 433.595 kb on - strand at 433.640 kb on - strand at 433.673 kb on + strand at 433.674 kb on - strand at 433.675 kb on + strand at 433.676 kb on - strand at 433.858 kb on - strand, within AO356_01945 at 433.923 kb on - strand, within AO356_01945 at 433.979 kb on - strand at 433.995 kb on + strand at 433.995 kb on + strand at 434.039 kb on + strand at 434.064 kb on - strand, within AO356_01950 at 434.116 kb on + strand, within AO356_01950 at 434.223 kb on - strand, within AO356_01950 at 434.275 kb on - strand, within AO356_01950 at 434.327 kb on + strand, within AO356_01950 at 434.327 kb on + strand, within AO356_01950 at 434.351 kb on + strand, within AO356_01950 at 434.380 kb on + strand, within AO356_01950 at 434.380 kb on + strand, within AO356_01950 at 434.381 kb on - strand, within AO356_01950 at 434.413 kb on - strand, within AO356_01950 at 434.479 kb on + strand at 434.523 kb on - strand at 434.655 kb on - strand, within AO356_01955 at 434.659 kb on - strand, within AO356_01955 at 434.743 kb on + strand, within AO356_01955 at 434.927 kb on + strand, within AO356_01955 at 434.941 kb on + strand, within AO356_01955 at 434.974 kb on + strand, within AO356_01955 at 434.980 kb on - strand, within AO356_01955 at 435.035 kb on + strand, within AO356_01955 at 435.086 kb on + strand at 435.086 kb on + strand at 435.087 kb on - strand at 435.128 kb on + strand at 435.132 kb on + strand at 435.132 kb on + strand at 435.133 kb on - strand at 435.142 kb on + strand at 435.142 kb on + strand at 435.144 kb on + strand at 435.144 kb on + strand at 435.160 kb on + strand at 435.248 kb on - strand, within AO356_01960 at 435.323 kb on + strand, within AO356_01960 at 435.324 kb on - strand, within AO356_01960 at 435.324 kb on - strand, within AO356_01960 at 435.429 kb on - strand, within AO356_01960 at 435.442 kb on + strand, within AO356_01960 at 435.442 kb on + strand, within AO356_01960 at 435.443 kb on - strand, within AO356_01960
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 433,001 + -0.0 433,011 - -0.4 433,057 - +0.1 433,095 + +0.5 433,115 + -0.3 433,115 + -0.2 433,116 - +1.6 433,157 - +0.8 433,188 + -0.2 433,189 - +0.5 433,189 - -0.4 433,204 + +0.7 433,204 + +0.1 433,204 + -0.3 433,204 + -1.3 433,204 + +0.8 433,205 - -0.0 433,205 - -0.0 433,249 + +0.4 433,249 + -0.6 433,249 + +0.1 433,249 + +0.2 433,250 - +0.2 433,250 - -0.3 433,250 - +0.8 433,266 - +0.5 433,266 - -0.0 433,330 + -0.2 433,330 + +0.5 433,330 + +0.0 433,331 - -0.4 433,331 - -0.4 433,331 - +1.4 433,331 - +0.7 433,331 - +0.8 433,334 + -1.1 433,335 - -0.4 433,467 + -0.4 433,467 + -1.5 433,467 + -0.3 433,467 + -1.0 433,467 + +0.3 433,467 + -0.4 433,467 + +0.7 433,467 + -1.0 433,467 + +0.8 433,467 + +0.6 433,467 + -0.2 433,467 + -0.4 433,467 + +1.0 433,467 + -0.5 433,468 - -0.1 433,468 - +0.8 433,468 - +0.4 433,468 - +0.4 433,468 - +0.1 433,468 - -0.0 433,468 - +0.6 433,468 - -0.2 433,468 - -0.2 433,468 - +0.7 433,468 - -0.1 433,468 - -1.3 433,468 - -0.0 433,468 - +0.6 433,468 - -1.2 433,468 - -0.4 433,487 - -0.2 433,487 - +0.9 433,487 - -0.1 433,500 - +0.9 433,523 + -0.2 433,560 + -0.6 433,595 - +1.9 433,640 - +0.9 433,673 + -0.5 433,674 - -0.3 433,675 + -0.0 433,676 - -0.0 433,858 - AO356_01945 0.49 +0.4 433,923 - AO356_01945 0.72 -0.4 433,979 - -1.2 433,995 + -0.2 433,995 + +0.3 434,039 + -0.4 434,064 - AO356_01950 0.14 -0.4 434,116 + AO356_01950 0.25 +0.0 434,223 - AO356_01950 0.47 +0.6 434,275 - AO356_01950 0.57 -0.7 434,327 + AO356_01950 0.68 +0.6 434,327 + AO356_01950 0.68 +1.1 434,351 + AO356_01950 0.73 +0.6 434,380 + AO356_01950 0.79 +0.7 434,380 + AO356_01950 0.79 -0.5 434,381 - AO356_01950 0.79 +1.0 434,413 - AO356_01950 0.86 -0.2 434,479 + +0.1 434,523 - +0.2 434,655 - AO356_01955 0.16 +0.1 434,659 - AO356_01955 0.17 +1.3 434,743 + AO356_01955 0.32 +0.5 434,927 + AO356_01955 0.64 +0.0 434,941 + AO356_01955 0.66 -0.2 434,974 + AO356_01955 0.72 -0.8 434,980 - AO356_01955 0.73 +0.3 435,035 + AO356_01955 0.83 +0.4 435,086 + -0.1 435,086 + -0.3 435,087 - -0.7 435,128 + -0.7 435,132 + -1.1 435,132 + -0.4 435,133 - -0.3 435,142 + -0.3 435,142 + -0.4 435,144 + -0.7 435,144 + +1.0 435,160 + -0.0 435,248 - AO356_01960 0.10 +0.5 435,323 + AO356_01960 0.18 +0.6 435,324 - AO356_01960 0.18 +0.5 435,324 - AO356_01960 0.18 +0.1 435,429 - AO356_01960 0.28 -0.4 435,442 + AO356_01960 0.29 -0.0 435,442 + AO356_01960 0.29 -1.1 435,443 - AO356_01960 0.30 +0.3
Or see this region's nucleotide sequence