Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01710

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01705 and AO356_01710 are separated by 173 nucleotidesAO356_01710 and AO356_01715 are separated by 2 nucleotides AO356_01705: AO356_01705 - hypothetical protein, at 384,221 to 385,438 _01705 AO356_01710: AO356_01710 - carbon-nitrogen hydrolase, at 385,612 to 386,742 _01710 AO356_01715: AO356_01715 - AraC family transcriptional regulator, at 386,745 to 387,782 _01715 Position (kb) 385 386 387Strain fitness (log2 ratio) -2 -1 0 1at 384.767 kb on + strand, within AO356_01705at 384.767 kb on + strand, within AO356_01705at 384.767 kb on + strand, within AO356_01705at 384.768 kb on - strand, within AO356_01705at 384.768 kb on - strand, within AO356_01705at 384.980 kb on + strand, within AO356_01705at 385.088 kb on + strand, within AO356_01705at 385.283 kb on + strand, within AO356_01705at 385.283 kb on + strand, within AO356_01705at 385.283 kb on + strand, within AO356_01705at 385.283 kb on + strand, within AO356_01705at 385.284 kb on - strand, within AO356_01705at 385.284 kb on - strand, within AO356_01705at 385.284 kb on - strand, within AO356_01705at 385.284 kb on - strand, within AO356_01705at 385.286 kb on + strand, within AO356_01705at 385.286 kb on + strand, within AO356_01705at 385.286 kb on + strand, within AO356_01705at 385.286 kb on + strand, within AO356_01705at 385.286 kb on + strand, within AO356_01705at 385.314 kb on - strand, within AO356_01705at 385.314 kb on - strand, within AO356_01705at 385.327 kb on + strandat 385.327 kb on + strandat 385.327 kb on + strandat 385.327 kb on + strandat 385.327 kb on + strandat 385.327 kb on + strandat 385.328 kb on - strandat 385.328 kb on - strandat 385.328 kb on - strandat 385.328 kb on - strandat 385.328 kb on - strandat 385.560 kb on + strandat 385.628 kb on - strandat 385.669 kb on + strandat 385.669 kb on + strandat 385.669 kb on + strandat 385.669 kb on + strandat 385.669 kb on + strandat 385.670 kb on - strandat 385.670 kb on - strandat 385.670 kb on - strandat 385.670 kb on - strandat 385.705 kb on + strandat 385.705 kb on + strandat 385.705 kb on + strandat 385.706 kb on - strandat 385.706 kb on - strandat 385.706 kb on - strandat 385.722 kb on + strandat 385.805 kb on - strand, within AO356_01710at 385.843 kb on + strand, within AO356_01710at 385.844 kb on - strand, within AO356_01710at 385.951 kb on + strand, within AO356_01710at 385.952 kb on - strand, within AO356_01710at 385.952 kb on - strand, within AO356_01710at 386.098 kb on + strand, within AO356_01710at 386.219 kb on - strand, within AO356_01710at 386.219 kb on - strand, within AO356_01710at 386.342 kb on + strand, within AO356_01710at 386.343 kb on - strand, within AO356_01710at 386.343 kb on - strand, within AO356_01710at 386.343 kb on - strand, within AO356_01710at 386.495 kb on - strand, within AO356_01710at 386.495 kb on - strand, within AO356_01710at 386.496 kb on + strand, within AO356_01710at 386.496 kb on + strand, within AO356_01710at 386.496 kb on + strand, within AO356_01710at 386.496 kb on + strand, within AO356_01710at 386.496 kb on + strand, within AO356_01710at 386.496 kb on + strand, within AO356_01710at 386.496 kb on + strand, within AO356_01710at 386.497 kb on - strand, within AO356_01710at 386.497 kb on - strand, within AO356_01710at 386.497 kb on - strand, within AO356_01710at 386.783 kb on - strandat 386.853 kb on + strand, within AO356_01715at 386.854 kb on - strand, within AO356_01715at 386.854 kb on - strand, within AO356_01715at 386.910 kb on + strand, within AO356_01715at 386.911 kb on - strand, within AO356_01715at 386.911 kb on - strand, within AO356_01715at 386.911 kb on - strand, within AO356_01715at 386.911 kb on - strand, within AO356_01715at 386.911 kb on - strand, within AO356_01715at 387.078 kb on + strand, within AO356_01715at 387.078 kb on + strand, within AO356_01715at 387.079 kb on - strand, within AO356_01715at 387.079 kb on - strand, within AO356_01715at 387.090 kb on + strand, within AO356_01715at 387.091 kb on - strand, within AO356_01715at 387.144 kb on + strand, within AO356_01715at 387.145 kb on - strand, within AO356_01715at 387.145 kb on - strand, within AO356_01715at 387.160 kb on - strand, within AO356_01715at 387.160 kb on - strand, within AO356_01715at 387.161 kb on + strand, within AO356_01715at 387.169 kb on - strand, within AO356_01715at 387.282 kb on + strand, within AO356_01715at 387.295 kb on - strand, within AO356_01715at 387.410 kb on + strand, within AO356_01715at 387.411 kb on - strand, within AO356_01715at 387.411 kb on - strand, within AO356_01715at 387.411 kb on - strand, within AO356_01715at 387.411 kb on - strand, within AO356_01715at 387.642 kb on + strand, within AO356_01715at 387.642 kb on + strand, within AO356_01715at 387.642 kb on + strand, within AO356_01715at 387.642 kb on + strand, within AO356_01715at 387.642 kb on + strand, within AO356_01715at 387.643 kb on - strand, within AO356_01715at 387.643 kb on - strand, within AO356_01715at 387.643 kb on - strand, within AO356_01715at 387.646 kb on + strand, within AO356_01715at 387.646 kb on + strand, within AO356_01715at 387.646 kb on + strand, within AO356_01715at 387.646 kb on + strand, within AO356_01715at 387.647 kb on - strand, within AO356_01715at 387.647 kb on - strand, within AO356_01715at 387.647 kb on - strand, within AO356_01715at 387.681 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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384,767 + AO356_01705 0.45 +0.5
384,767 + AO356_01705 0.45 -0.5
384,767 + AO356_01705 0.45 +0.2
384,768 - AO356_01705 0.45 -0.1
384,768 - AO356_01705 0.45 -0.6
384,980 + AO356_01705 0.62 -0.5
385,088 + AO356_01705 0.71 +0.1
385,283 + AO356_01705 0.87 -0.1
385,283 + AO356_01705 0.87 +0.1
385,283 + AO356_01705 0.87 +0.1
385,283 + AO356_01705 0.87 +0.1
385,284 - AO356_01705 0.87 -0.3
385,284 - AO356_01705 0.87 +0.1
385,284 - AO356_01705 0.87 +0.6
385,284 - AO356_01705 0.87 +0.3
385,286 + AO356_01705 0.87 +0.4
385,286 + AO356_01705 0.87 +0.2
385,286 + AO356_01705 0.87 +0.3
385,286 + AO356_01705 0.87 +0.3
385,286 + AO356_01705 0.87 +1.1
385,314 - AO356_01705 0.90 -0.5
385,314 - AO356_01705 0.90 -0.0
385,327 + -0.1
385,327 + +0.4
385,327 + +0.4
385,327 + -0.5
385,327 + +0.1
385,327 + -0.3
385,328 - -1.7
385,328 - -0.1
385,328 - -0.9
385,328 - -0.1
385,328 - +0.8
385,560 + -1.0
385,628 - +0.4
385,669 + -0.6
385,669 + +0.0
385,669 + +0.1
385,669 + +0.2
385,669 + -0.7
385,670 - +0.5
385,670 - -0.7
385,670 - -0.5
385,670 - +1.5
385,705 + +0.9
385,705 + +0.2
385,705 + +0.3
385,706 - -1.8
385,706 - +0.4
385,706 - +0.4
385,722 + +0.5
385,805 - AO356_01710 0.17 +0.3
385,843 + AO356_01710 0.20 +0.2
385,844 - AO356_01710 0.21 -0.0
385,951 + AO356_01710 0.30 -0.2
385,952 - AO356_01710 0.30 -0.2
385,952 - AO356_01710 0.30 -1.6
386,098 + AO356_01710 0.43 -0.7
386,219 - AO356_01710 0.54 +0.2
386,219 - AO356_01710 0.54 -1.0
386,342 + AO356_01710 0.65 +1.0
386,343 - AO356_01710 0.65 +0.1
386,343 - AO356_01710 0.65 -0.2
386,343 - AO356_01710 0.65 -0.4
386,495 - AO356_01710 0.78 -0.3
386,495 - AO356_01710 0.78 -0.2
386,496 + AO356_01710 0.78 +0.1
386,496 + AO356_01710 0.78 +1.4
386,496 + AO356_01710 0.78 +0.6
386,496 + AO356_01710 0.78 -0.6
386,496 + AO356_01710 0.78 -0.3
386,496 + AO356_01710 0.78 +0.9
386,496 + AO356_01710 0.78 +0.3
386,497 - AO356_01710 0.78 -1.1
386,497 - AO356_01710 0.78 -0.3
386,497 - AO356_01710 0.78 -0.3
386,783 - +0.7
386,853 + AO356_01715 0.10 -0.4
386,854 - AO356_01715 0.11 +0.0
386,854 - AO356_01715 0.11 +0.6
386,910 + AO356_01715 0.16 -1.5
386,911 - AO356_01715 0.16 +0.3
386,911 - AO356_01715 0.16 +0.6
386,911 - AO356_01715 0.16 -0.6
386,911 - AO356_01715 0.16 +0.0
386,911 - AO356_01715 0.16 +0.3
387,078 + AO356_01715 0.32 +0.6
387,078 + AO356_01715 0.32 +0.9
387,079 - AO356_01715 0.32 +0.1
387,079 - AO356_01715 0.32 +1.2
387,090 + AO356_01715 0.33 +0.2
387,091 - AO356_01715 0.33 -0.0
387,144 + AO356_01715 0.38 +1.2
387,145 - AO356_01715 0.39 -0.2
387,145 - AO356_01715 0.39 +0.2
387,160 - AO356_01715 0.40 -0.9
387,160 - AO356_01715 0.40 +0.5
387,161 + AO356_01715 0.40 +0.1
387,169 - AO356_01715 0.41 -0.9
387,282 + AO356_01715 0.52 -0.7
387,295 - AO356_01715 0.53 +0.7
387,410 + AO356_01715 0.64 -0.1
387,411 - AO356_01715 0.64 -0.5
387,411 - AO356_01715 0.64 +0.3
387,411 - AO356_01715 0.64 -1.0
387,411 - AO356_01715 0.64 -0.6
387,642 + AO356_01715 0.86 +0.3
387,642 + AO356_01715 0.86 -0.3
387,642 + AO356_01715 0.86 +0.7
387,642 + AO356_01715 0.86 -0.9
387,642 + AO356_01715 0.86 -0.5
387,643 - AO356_01715 0.87 -1.8
387,643 - AO356_01715 0.87 +0.0
387,643 - AO356_01715 0.87 -0.3
387,646 + AO356_01715 0.87 -0.9
387,646 + AO356_01715 0.87 -0.5
387,646 + AO356_01715 0.87 +0.6
387,646 + AO356_01715 0.87 +0.2
387,647 - AO356_01715 0.87 -0.0
387,647 - AO356_01715 0.87 +0.5
387,647 - AO356_01715 0.87 +0.2
387,681 + +0.1

Or see this region's nucleotide sequence