Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00655

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00650 and AO356_00655 are separated by 35 nucleotidesAO356_00655 and AO356_00660 are separated by 348 nucleotides AO356_00650: AO356_00650 - MFS transporter, at 138,862 to 140,043 _00650 AO356_00655: AO356_00655 - dioxygenase, at 140,079 to 141,527 _00655 AO356_00660: AO356_00660 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 141,876 to 142,727 _00660 Position (kb) 140 141 142Strain fitness (log2 ratio) -2 -1 0 1 2at 139.222 kb on + strand, within AO356_00650at 139.717 kb on + strand, within AO356_00650at 139.717 kb on + strand, within AO356_00650at 139.718 kb on - strand, within AO356_00650at 139.764 kb on + strand, within AO356_00650at 139.765 kb on - strand, within AO356_00650at 139.765 kb on - strand, within AO356_00650at 139.765 kb on - strand, within AO356_00650at 139.948 kb on + strandat 139.948 kb on + strandat 139.948 kb on + strandat 139.979 kb on + strandat 139.979 kb on + strandat 139.980 kb on - strandat 140.085 kb on - strandat 140.124 kb on + strandat 140.205 kb on + strandat 140.625 kb on + strand, within AO356_00655at 140.646 kb on - strand, within AO356_00655at 140.662 kb on - strand, within AO356_00655at 140.757 kb on + strand, within AO356_00655at 140.930 kb on + strand, within AO356_00655at 140.930 kb on + strand, within AO356_00655at 140.930 kb on + strand, within AO356_00655at 140.930 kb on + strand, within AO356_00655at 140.931 kb on - strand, within AO356_00655at 140.931 kb on - strand, within AO356_00655at 140.931 kb on - strand, within AO356_00655at 140.964 kb on + strand, within AO356_00655at 140.964 kb on + strand, within AO356_00655at 140.965 kb on - strand, within AO356_00655at 140.965 kb on - strand, within AO356_00655at 140.994 kb on - strand, within AO356_00655at 141.001 kb on - strand, within AO356_00655at 141.024 kb on + strand, within AO356_00655at 141.024 kb on + strand, within AO356_00655at 141.028 kb on + strand, within AO356_00655at 141.029 kb on - strand, within AO356_00655at 141.123 kb on + strand, within AO356_00655at 141.213 kb on + strand, within AO356_00655at 141.213 kb on + strand, within AO356_00655at 141.214 kb on - strand, within AO356_00655at 141.376 kb on - strand, within AO356_00655at 141.607 kb on + strandat 141.608 kb on - strandat 141.615 kb on + strandat 141.615 kb on + strandat 141.616 kb on - strandat 141.616 kb on - strandat 141.751 kb on + strandat 141.751 kb on + strandat 141.751 kb on + strandat 141.752 kb on - strandat 141.752 kb on - strandat 141.834 kb on - strandat 141.876 kb on - strandat 141.915 kb on + strandat 141.915 kb on + strandat 142.122 kb on + strand, within AO356_00660at 142.123 kb on - strand, within AO356_00660at 142.179 kb on - strand, within AO356_00660at 142.321 kb on - strand, within AO356_00660at 142.321 kb on - strand, within AO356_00660at 142.321 kb on - strand, within AO356_00660at 142.342 kb on - strand, within AO356_00660

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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139,222 + AO356_00650 0.30 +0.1
139,717 + AO356_00650 0.72 -0.1
139,717 + AO356_00650 0.72 -0.5
139,718 - AO356_00650 0.72 -0.1
139,764 + AO356_00650 0.76 +0.3
139,765 - AO356_00650 0.76 -0.2
139,765 - AO356_00650 0.76 -0.1
139,765 - AO356_00650 0.76 +0.2
139,948 + -0.1
139,948 + -0.0
139,948 + +0.6
139,979 + -1.4
139,979 + +0.1
139,980 - +0.6
140,085 - +0.7
140,124 + -0.4
140,205 + -0.5
140,625 + AO356_00655 0.38 -0.4
140,646 - AO356_00655 0.39 -0.4
140,662 - AO356_00655 0.40 -1.1
140,757 + AO356_00655 0.47 +0.1
140,930 + AO356_00655 0.59 +0.1
140,930 + AO356_00655 0.59 -1.6
140,930 + AO356_00655 0.59 -0.3
140,930 + AO356_00655 0.59 -0.8
140,931 - AO356_00655 0.59 -0.3
140,931 - AO356_00655 0.59 +0.9
140,931 - AO356_00655 0.59 -0.8
140,964 + AO356_00655 0.61 +0.3
140,964 + AO356_00655 0.61 +1.6
140,965 - AO356_00655 0.61 -1.0
140,965 - AO356_00655 0.61 +0.7
140,994 - AO356_00655 0.63 +0.2
141,001 - AO356_00655 0.64 +0.2
141,024 + AO356_00655 0.65 -0.8
141,024 + AO356_00655 0.65 -2.1
141,028 + AO356_00655 0.65 +0.1
141,029 - AO356_00655 0.66 -1.2
141,123 + AO356_00655 0.72 -0.5
141,213 + AO356_00655 0.78 +0.4
141,213 + AO356_00655 0.78 -1.9
141,214 - AO356_00655 0.78 +0.3
141,376 - AO356_00655 0.90 -0.3
141,607 + -0.0
141,608 - +0.2
141,615 + +0.7
141,615 + -1.5
141,616 - -0.1
141,616 - +0.3
141,751 + -1.0
141,751 + -0.3
141,751 + +0.4
141,752 - +0.3
141,752 - +1.5
141,834 - +0.6
141,876 - +2.0
141,915 + -0.3
141,915 + +0.5
142,122 + AO356_00660 0.29 +0.2
142,123 - AO356_00660 0.29 -0.3
142,179 - AO356_00660 0.36 +0.1
142,321 - AO356_00660 0.52 +1.4
142,321 - AO356_00660 0.52 -1.1
142,321 - AO356_00660 0.52 -0.8
142,342 - AO356_00660 0.55 +1.0

Or see this region's nucleotide sequence