Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2849

Experiment: MoYLS4 with Ceftazidime 0.75 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2848 and DvMF_2849 are separated by 277 nucleotidesDvMF_2849 and DvMF_2850 are separated by 256 nucleotides DvMF_2848: DvMF_2848 - CBS domain containing membrane protein (RefSeq), at 3,600,350 to 3,601,021 _2848 DvMF_2849: DvMF_2849 - protein of unknown function DUF161 (RefSeq), at 3,601,299 to 3,602,165 _2849 DvMF_2850: DvMF_2850 - hypothetical protein (RefSeq), at 3,602,422 to 3,603,507 _2850 Position (kb) 3601 3602 3603Strain fitness (log2 ratio) -1 0 1at 3600.444 kb on + strand, within DvMF_2848at 3601.246 kb on - strandat 3601.575 kb on + strand, within DvMF_2849at 3601.583 kb on - strand, within DvMF_2849at 3601.674 kb on - strand, within DvMF_2849at 3602.070 kb on - strand, within DvMF_2849at 3602.166 kb on + strandat 3602.174 kb on - strandat 3602.210 kb on - strandat 3602.403 kb on + strandat 3602.411 kb on - strandat 3602.815 kb on - strand, within DvMF_2850at 3602.841 kb on + strand, within DvMF_2850at 3602.841 kb on + strand, within DvMF_2850at 3602.873 kb on - strand, within DvMF_2850at 3603.132 kb on + strand, within DvMF_2850

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.75 mg/ml
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3,600,444 + DvMF_2848 0.14 +0.8
3,601,246 - -0.2
3,601,575 + DvMF_2849 0.32 -0.1
3,601,583 - DvMF_2849 0.33 -0.4
3,601,674 - DvMF_2849 0.43 -0.5
3,602,070 - DvMF_2849 0.89 -0.5
3,602,166 + +0.1
3,602,174 - -0.9
3,602,210 - -1.6
3,602,403 + -0.4
3,602,411 - -0.3
3,602,815 - DvMF_2850 0.36 -0.6
3,602,841 + DvMF_2850 0.39 +0.3
3,602,841 + DvMF_2850 0.39 -0.0
3,602,873 - DvMF_2850 0.42 -0.4
3,603,132 + DvMF_2850 0.65 -0.7

Or see this region's nucleotide sequence