Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2116

Experiment: MoYLS4 with Ceftazidime 0.75 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2114 and DvMF_2115 are separated by 235 nucleotidesDvMF_2115 and DvMF_2116 are separated by 108 nucleotidesDvMF_2116 and DvMF_2117 are separated by 259 nucleotidesDvMF_2117 and DvMF_2118 overlap by 11 nucleotides DvMF_2114: DvMF_2114 - putative rRNA methylase (RefSeq), at 2,634,130 to 2,634,861 _2114 DvMF_2115: DvMF_2115 - hypothetical protein (RefSeq), at 2,635,097 to 2,635,339 _2115 DvMF_2116: DvMF_2116 - two-component system, regulatory protein (RefSeq), at 2,635,448 to 2,635,906 _2116 DvMF_2117: DvMF_2117 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 2,636,166 to 2,636,789 _2117 DvMF_2118: DvMF_2118 - hypothetical protein (RefSeq), at 2,636,779 to 2,637,171 _2118 Position (kb) 2635 2636Strain fitness (log2 ratio) -2 -1 0 1at 2634.575 kb on + strand, within DvMF_2114at 2634.691 kb on + strand, within DvMF_2114at 2635.102 kb on - strandat 2635.205 kb on - strand, within DvMF_2115at 2635.252 kb on + strand, within DvMF_2115at 2635.300 kb on - strand, within DvMF_2115at 2635.329 kb on + strandat 2635.446 kb on + strandat 2635.580 kb on - strand, within DvMF_2116at 2635.875 kb on + strandat 2635.884 kb on - strandat 2636.134 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.75 mg/ml
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2,634,575 + DvMF_2114 0.61 -1.9
2,634,691 + DvMF_2114 0.77 -1.0
2,635,102 - -0.4
2,635,205 - DvMF_2115 0.44 -0.3
2,635,252 + DvMF_2115 0.64 -0.1
2,635,300 - DvMF_2115 0.84 +0.6
2,635,329 + -1.1
2,635,446 + -0.1
2,635,580 - DvMF_2116 0.29 -0.8
2,635,875 + -0.6
2,635,884 - -0.8
2,636,134 + -0.5

Or see this region's nucleotide sequence