Experiment: MoYLS4 with Ceftazidime 0.75 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2114 and DvMF_2115 are separated by 235 nucleotides DvMF_2115 and DvMF_2116 are separated by 108 nucleotides DvMF_2116 and DvMF_2117 are separated by 259 nucleotides DvMF_2117 and DvMF_2118 overlap by 11 nucleotides
DvMF_2114: DvMF_2114 - putative rRNA methylase (RefSeq), at 2,634,130 to 2,634,861
_2114
DvMF_2115: DvMF_2115 - hypothetical protein (RefSeq), at 2,635,097 to 2,635,339
_2115
DvMF_2116: DvMF_2116 - two-component system, regulatory protein (RefSeq), at 2,635,448 to 2,635,906
_2116
DvMF_2117: DvMF_2117 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 2,636,166 to 2,636,789
_2117
DvMF_2118: DvMF_2118 - hypothetical protein (RefSeq), at 2,636,779 to 2,637,171
_2118
Position (kb)
2635
2636 Strain fitness (log2 ratio)
-2
-1
0
1 at 2634.575 kb on + strand, within DvMF_2114 at 2634.691 kb on + strand, within DvMF_2114 at 2635.102 kb on - strand at 2635.205 kb on - strand, within DvMF_2115 at 2635.252 kb on + strand, within DvMF_2115 at 2635.300 kb on - strand, within DvMF_2115 at 2635.329 kb on + strand at 2635.446 kb on + strand at 2635.580 kb on - strand, within DvMF_2116 at 2635.875 kb on + strand at 2635.884 kb on - strand at 2636.134 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.75 mg/ml remove 2,634,575 + DvMF_2114 0.61 -1.9 2,634,691 + DvMF_2114 0.77 -1.0 2,635,102 - -0.4 2,635,205 - DvMF_2115 0.44 -0.3 2,635,252 + DvMF_2115 0.64 -0.1 2,635,300 - DvMF_2115 0.84 +0.6 2,635,329 + -1.1 2,635,446 + -0.1 2,635,580 - DvMF_2116 0.29 -0.8 2,635,875 + -0.6 2,635,884 - -0.8 2,636,134 + -0.5
Or see this region's nucleotide sequence