Experiment: MoYLS4 with Ceftazidime 0.75 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1990 and DvMF_1991 are separated by 35 nucleotides DvMF_1991 and DvMF_1992 are separated by 332 nucleotides DvMF_1992 and DvMF_1993 overlap by 16 nucleotides
DvMF_1990: DvMF_1990 - Pyruvate, water dikinase (RefSeq), at 2,464,945 to 2,467,740
_1990
DvMF_1991: DvMF_1991 - response regulator receiver protein (RefSeq), at 2,467,776 to 2,468,237
_1991
DvMF_1992: DvMF_1992 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,468,570 to 2,469,688
_1992
DvMF_1993: DvMF_1993 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 2,469,673 to 2,471,133
_1993
Position (kb)
2468
2469
2470 Strain fitness (log2 ratio)
-1
0
1 at 2468.281 kb on + strand at 2468.388 kb on + strand at 2468.388 kb on + strand at 2468.404 kb on - strand at 2468.423 kb on + strand at 2468.864 kb on - strand, within DvMF_1992 at 2468.990 kb on - strand, within DvMF_1992 at 2469.056 kb on - strand, within DvMF_1992 at 2469.220 kb on - strand, within DvMF_1992 at 2469.225 kb on + strand, within DvMF_1992 at 2469.306 kb on - strand, within DvMF_1992 at 2469.333 kb on + strand, within DvMF_1992 at 2469.449 kb on - strand, within DvMF_1992 at 2469.521 kb on - strand, within DvMF_1992 at 2469.663 kb on + strand at 2470.006 kb on - strand, within DvMF_1993 at 2470.378 kb on - strand, within DvMF_1993 at 2470.380 kb on + strand, within DvMF_1993 at 2470.494 kb on + strand, within DvMF_1993
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.75 mg/ml remove 2,468,281 + -1.1 2,468,388 + +0.1 2,468,388 + -0.4 2,468,404 - -0.6 2,468,423 + -0.5 2,468,864 - DvMF_1992 0.26 -0.6 2,468,990 - DvMF_1992 0.38 -1.5 2,469,056 - DvMF_1992 0.43 -0.7 2,469,220 - DvMF_1992 0.58 -0.9 2,469,225 + DvMF_1992 0.59 -0.7 2,469,306 - DvMF_1992 0.66 -0.6 2,469,333 + DvMF_1992 0.68 -1.4 2,469,449 - DvMF_1992 0.79 -1.1 2,469,521 - DvMF_1992 0.85 -0.1 2,469,663 + +0.3 2,470,006 - DvMF_1993 0.23 -1.5 2,470,378 - DvMF_1993 0.48 -0.8 2,470,380 + DvMF_1993 0.48 -0.4 2,470,494 + DvMF_1993 0.56 -0.7
Or see this region's nucleotide sequence