Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1433

Experiment: MoYLS4 with Ceftazidime 0.75 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1432 and DvMF_1433 are separated by 143 nucleotidesDvMF_1433 and DvMF_1434 are separated by 342 nucleotides DvMF_1432: DvMF_1432 - hypothetical protein (RefSeq), at 1,753,027 to 1,754,031 _1432 DvMF_1433: DvMF_1433 - iron-containing alcohol dehydrogenase (RefSeq), at 1,754,175 to 1,755,470 _1433 DvMF_1434: DvMF_1434 - DNA-directed DNA polymerase (RefSeq), at 1,755,813 to 1,757,306 _1434 Position (kb) 1754 1755 1756Strain fitness (log2 ratio) -1 0 1at 1753.474 kb on + strand, within DvMF_1432at 1753.490 kb on - strand, within DvMF_1432at 1753.629 kb on - strand, within DvMF_1432at 1753.699 kb on - strand, within DvMF_1432at 1753.871 kb on - strand, within DvMF_1432at 1753.917 kb on - strand, within DvMF_1432at 1754.038 kb on - strandat 1754.141 kb on - strandat 1754.232 kb on + strandat 1754.317 kb on + strand, within DvMF_1433at 1754.351 kb on + strand, within DvMF_1433at 1754.400 kb on - strand, within DvMF_1433at 1754.478 kb on - strand, within DvMF_1433at 1754.527 kb on - strand, within DvMF_1433at 1754.527 kb on - strand, within DvMF_1433at 1754.527 kb on - strand, within DvMF_1433at 1754.527 kb on - strand, within DvMF_1433at 1754.530 kb on + strand, within DvMF_1433at 1754.628 kb on - strand, within DvMF_1433at 1754.888 kb on - strand, within DvMF_1433at 1755.035 kb on - strand, within DvMF_1433at 1755.256 kb on - strand, within DvMF_1433at 1755.383 kb on - strandat 1755.419 kb on - strandat 1755.440 kb on + strandat 1755.686 kb on - strandat 1755.826 kb on + strandat 1755.855 kb on + strandat 1756.052 kb on + strand, within DvMF_1434at 1756.052 kb on + strand, within DvMF_1434at 1756.070 kb on - strand, within DvMF_1434at 1756.097 kb on - strand, within DvMF_1434at 1756.181 kb on - strand, within DvMF_1434

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.75 mg/ml
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1,753,474 + DvMF_1432 0.44 -1.0
1,753,490 - DvMF_1432 0.46 -0.8
1,753,629 - DvMF_1432 0.60 +0.5
1,753,699 - DvMF_1432 0.67 -0.1
1,753,871 - DvMF_1432 0.84 -0.3
1,753,917 - DvMF_1432 0.89 +0.3
1,754,038 - -0.2
1,754,141 - -0.2
1,754,232 + -0.7
1,754,317 + DvMF_1433 0.11 -0.4
1,754,351 + DvMF_1433 0.14 -0.6
1,754,400 - DvMF_1433 0.17 +0.4
1,754,478 - DvMF_1433 0.23 -0.3
1,754,527 - DvMF_1433 0.27 -0.1
1,754,527 - DvMF_1433 0.27 +0.1
1,754,527 - DvMF_1433 0.27 -0.1
1,754,527 - DvMF_1433 0.27 -0.3
1,754,530 + DvMF_1433 0.27 +0.2
1,754,628 - DvMF_1433 0.35 -0.2
1,754,888 - DvMF_1433 0.55 -0.5
1,755,035 - DvMF_1433 0.66 +0.4
1,755,256 - DvMF_1433 0.83 -0.6
1,755,383 - -0.4
1,755,419 - -0.2
1,755,440 + +0.2
1,755,686 - -0.3
1,755,826 + +0.1
1,755,855 + -1.0
1,756,052 + DvMF_1434 0.16 +0.0
1,756,052 + DvMF_1434 0.16 -0.6
1,756,070 - DvMF_1434 0.17 -0.7
1,756,097 - DvMF_1434 0.19 -0.5
1,756,181 - DvMF_1434 0.25 -0.2

Or see this region's nucleotide sequence