Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1156

Experiment: MoYLS4 with Ceftazidime 0.75 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1155 and DvMF_1156 are separated by 306 nucleotidesDvMF_1156 and DvMF_1157 are separated by 169 nucleotides DvMF_1155: DvMF_1155 - RNA methyltransferase, TrmH family, group 1 (RefSeq), at 1,416,747 to 1,417,547 _1155 DvMF_1156: DvMF_1156 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 1,417,854 to 1,420,274 _1156 DvMF_1157: DvMF_1157 - putative PAS/PAC sensor protein (RefSeq), at 1,420,444 to 1,422,615 _1157 Position (kb) 1417 1418 1419 1420 1421Strain fitness (log2 ratio) -2 -1 0 1at 1416.890 kb on + strand, within DvMF_1155at 1416.990 kb on - strand, within DvMF_1155at 1417.042 kb on - strand, within DvMF_1155at 1417.066 kb on + strand, within DvMF_1155at 1417.069 kb on - strand, within DvMF_1155at 1417.210 kb on - strand, within DvMF_1155at 1417.220 kb on - strand, within DvMF_1155at 1417.241 kb on - strand, within DvMF_1155at 1417.259 kb on + strand, within DvMF_1155at 1417.487 kb on + strandat 1417.490 kb on - strandat 1417.677 kb on - strandat 1417.865 kb on - strandat 1417.924 kb on + strandat 1417.961 kb on + strandat 1418.151 kb on + strand, within DvMF_1156at 1418.151 kb on + strand, within DvMF_1156at 1418.225 kb on + strand, within DvMF_1156at 1418.225 kb on - strand, within DvMF_1156at 1418.433 kb on + strand, within DvMF_1156at 1418.433 kb on + strand, within DvMF_1156at 1418.445 kb on + strand, within DvMF_1156at 1418.515 kb on + strand, within DvMF_1156at 1418.605 kb on + strand, within DvMF_1156at 1418.651 kb on + strand, within DvMF_1156at 1418.659 kb on - strand, within DvMF_1156at 1418.734 kb on + strand, within DvMF_1156at 1418.774 kb on - strand, within DvMF_1156at 1419.457 kb on + strand, within DvMF_1156at 1419.564 kb on + strand, within DvMF_1156at 1419.591 kb on - strand, within DvMF_1156at 1420.165 kb on - strandat 1420.359 kb on - strandat 1420.478 kb on + strandat 1420.880 kb on - strand, within DvMF_1157at 1420.893 kb on + strand, within DvMF_1157at 1421.037 kb on + strand, within DvMF_1157at 1421.052 kb on - strand, within DvMF_1157at 1421.073 kb on - strand, within DvMF_1157at 1421.078 kb on + strand, within DvMF_1157

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.75 mg/ml
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1,416,890 + DvMF_1155 0.18 -0.7
1,416,990 - DvMF_1155 0.30 +0.5
1,417,042 - DvMF_1155 0.37 -0.3
1,417,066 + DvMF_1155 0.40 +0.0
1,417,069 - DvMF_1155 0.40 -0.9
1,417,210 - DvMF_1155 0.58 -0.5
1,417,220 - DvMF_1155 0.59 -0.5
1,417,241 - DvMF_1155 0.62 -1.9
1,417,259 + DvMF_1155 0.64 -0.5
1,417,487 + -0.6
1,417,490 - +0.0
1,417,677 - -0.3
1,417,865 - +0.5
1,417,924 + -0.4
1,417,961 + -1.3
1,418,151 + DvMF_1156 0.12 -0.4
1,418,151 + DvMF_1156 0.12 -0.1
1,418,225 + DvMF_1156 0.15 -0.1
1,418,225 - DvMF_1156 0.15 +0.2
1,418,433 + DvMF_1156 0.24 -0.3
1,418,433 + DvMF_1156 0.24 -0.6
1,418,445 + DvMF_1156 0.24 +0.1
1,418,515 + DvMF_1156 0.27 -0.5
1,418,605 + DvMF_1156 0.31 +0.0
1,418,651 + DvMF_1156 0.33 -0.6
1,418,659 - DvMF_1156 0.33 -0.5
1,418,734 + DvMF_1156 0.36 -0.0
1,418,774 - DvMF_1156 0.38 -0.3
1,419,457 + DvMF_1156 0.66 -0.3
1,419,564 + DvMF_1156 0.71 +0.3
1,419,591 - DvMF_1156 0.72 +0.2
1,420,165 - -0.2
1,420,359 - -0.7
1,420,478 + -0.6
1,420,880 - DvMF_1157 0.20 +0.3
1,420,893 + DvMF_1157 0.21 +0.2
1,421,037 + DvMF_1157 0.27 +0.5
1,421,052 - DvMF_1157 0.28 -0.5
1,421,073 - DvMF_1157 0.29 -0.2
1,421,078 + DvMF_1157 0.29 +0.4

Or see this region's nucleotide sequence