Experiment: MoYLS4 with Ceftazidime 0.75 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0222 and DvMF_0223 overlap by 11 nucleotides DvMF_0223 and DvMF_0224 overlap by 4 nucleotides
DvMF_0222: DvMF_0222 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 248,395 to 249,816
_0222
DvMF_0223: DvMF_0223 - glycine dehydrogenase subunit 2 (RefSeq), at 249,806 to 251,251
_0223
DvMF_0224: DvMF_0224 - glycine dehydrogenase subunit 1 (RefSeq), at 251,248 to 252,579
_0224
Position (kb) 249
250
251
252 Strain fitness (log2 ratio) -1
0
1 at 248.844 kb on - strand, within DvMF_0222 at 248.908 kb on - strand, within DvMF_0222 at 248.924 kb on - strand, within DvMF_0222 at 248.931 kb on + strand, within DvMF_0222 at 248.931 kb on + strand, within DvMF_0222 at 248.933 kb on + strand, within DvMF_0222 at 248.941 kb on - strand, within DvMF_0222 at 248.946 kb on + strand, within DvMF_0222 at 249.031 kb on + strand, within DvMF_0222 at 249.115 kb on - strand, within DvMF_0222 at 249.374 kb on - strand, within DvMF_0222 at 249.469 kb on + strand, within DvMF_0222 at 249.558 kb on + strand, within DvMF_0222 at 249.582 kb on - strand, within DvMF_0222 at 249.673 kb on + strand, within DvMF_0222 at 249.696 kb on - strand at 249.696 kb on - strand at 249.850 kb on + strand at 249.902 kb on + strand at 249.927 kb on + strand at 249.927 kb on + strand at 250.049 kb on - strand, within DvMF_0223 at 250.214 kb on + strand, within DvMF_0223 at 250.465 kb on - strand, within DvMF_0223 at 250.597 kb on + strand, within DvMF_0223 at 250.605 kb on - strand, within DvMF_0223 at 250.697 kb on + strand, within DvMF_0223 at 250.713 kb on - strand, within DvMF_0223 at 250.766 kb on - strand, within DvMF_0223 at 250.785 kb on + strand, within DvMF_0223 at 250.858 kb on - strand, within DvMF_0223 at 250.955 kb on - strand, within DvMF_0223 at 251.075 kb on + strand, within DvMF_0223 at 251.118 kb on - strand at 251.124 kb on + strand at 251.125 kb on + strand at 251.297 kb on - strand at 251.350 kb on - strand at 251.392 kb on + strand, within DvMF_0224 at 251.393 kb on - strand, within DvMF_0224 at 251.601 kb on + strand, within DvMF_0224 at 251.900 kb on + strand, within DvMF_0224 at 252.217 kb on - strand, within DvMF_0224
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.75 mg/ml remove 248,844 - DvMF_0222 0.32 +0.5 248,908 - DvMF_0222 0.36 -0.6 248,924 - DvMF_0222 0.37 -0.6 248,931 + DvMF_0222 0.38 -0.9 248,931 + DvMF_0222 0.38 -0.3 248,933 + DvMF_0222 0.38 -0.6 248,941 - DvMF_0222 0.38 -1.0 248,946 + DvMF_0222 0.39 -0.5 249,031 + DvMF_0222 0.45 -1.2 249,115 - DvMF_0222 0.51 -0.4 249,374 - DvMF_0222 0.69 -0.6 249,469 + DvMF_0222 0.76 +0.0 249,558 + DvMF_0222 0.82 -0.4 249,582 - DvMF_0222 0.83 -0.0 249,673 + DvMF_0222 0.90 +1.1 249,696 - -0.6 249,696 - -0.5 249,850 + -0.9 249,902 + -0.4 249,927 + -0.3 249,927 + -0.8 250,049 - DvMF_0223 0.17 -0.3 250,214 + DvMF_0223 0.28 -0.7 250,465 - DvMF_0223 0.46 -0.6 250,597 + DvMF_0223 0.55 -0.4 250,605 - DvMF_0223 0.55 -0.5 250,697 + DvMF_0223 0.62 -0.5 250,713 - DvMF_0223 0.63 -0.9 250,766 - DvMF_0223 0.66 -0.9 250,785 + DvMF_0223 0.68 -0.4 250,858 - DvMF_0223 0.73 +0.6 250,955 - DvMF_0223 0.79 -0.9 251,075 + DvMF_0223 0.88 -0.5 251,118 - +0.2 251,124 + -1.7 251,125 + +0.3 251,297 - +0.3 251,350 - -0.3 251,392 + DvMF_0224 0.11 -0.4 251,393 - DvMF_0224 0.11 -0.9 251,601 + DvMF_0224 0.27 +0.6 251,900 + DvMF_0224 0.49 -0.5 252,217 - DvMF_0224 0.73 -0.4
Or see this region's nucleotide sequence