Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0219

Experiment: MoYLS4 with Ceftazidime 0.75 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0217 and DvMF_0218 are separated by 102 nucleotidesDvMF_0218 and DvMF_0219 are separated by 317 nucleotidesDvMF_0219 and DvMF_0220 are separated by 362 nucleotides DvMF_0217: DvMF_0217 - Hpt protein (RefSeq), at 244,495 to 244,860 _0217 DvMF_0218: DvMF_0218 - hypothetical protein (RefSeq), at 244,963 to 245,226 _0218 DvMF_0219: DvMF_0219 - Peroxiredoxin (RefSeq), at 245,544 to 246,170 _0219 DvMF_0220: DvMF_0220 - hypothetical protein (RefSeq), at 246,533 to 247,135 _0220 Position (kb) 245 246 247Strain fitness (log2 ratio) -2 -1 0 1at 244.740 kb on + strand, within DvMF_0217at 244.754 kb on - strand, within DvMF_0217at 244.887 kb on + strandat 244.921 kb on + strandat 244.939 kb on - strandat 245.212 kb on - strandat 245.654 kb on + strand, within DvMF_0219at 245.725 kb on + strand, within DvMF_0219at 245.728 kb on - strand, within DvMF_0219at 245.761 kb on + strand, within DvMF_0219at 245.983 kb on - strand, within DvMF_0219at 245.988 kb on + strand, within DvMF_0219at 246.015 kb on - strand, within DvMF_0219at 246.450 kb on - strandat 246.709 kb on + strand, within DvMF_0220at 246.873 kb on - strand, within DvMF_0220

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.75 mg/ml
remove
244,740 + DvMF_0217 0.67 +0.4
244,754 - DvMF_0217 0.71 +0.8
244,887 + -0.5
244,921 + -0.5
244,939 - -2.1
245,212 - -0.6
245,654 + DvMF_0219 0.18 -0.7
245,725 + DvMF_0219 0.29 -0.4
245,728 - DvMF_0219 0.29 +0.0
245,761 + DvMF_0219 0.35 -0.4
245,983 - DvMF_0219 0.70 -0.4
245,988 + DvMF_0219 0.71 -0.8
246,015 - DvMF_0219 0.75 +0.0
246,450 - -1.0
246,709 + DvMF_0220 0.29 -0.8
246,873 - DvMF_0220 0.56 -1.3

Or see this region's nucleotide sequence