Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4206

Experiment: m.b. copper (II) chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4205 and Dshi_4206 are separated by 61 nucleotidesDshi_4206 and Dshi_4207 are separated by 70 nucleotides Dshi_4205: Dshi_4205 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 52,196 to 53,524 _4205 Dshi_4206: Dshi_4206 - aminotransferase class IV (RefSeq), at 53,586 to 54,509 _4206 Dshi_4207: Dshi_4207 - protein of unknown function DUF900 hydrolase family protein (RefSeq), at 54,580 to 55,551 _4207 Position (kb) 53 54 55Strain fitness (log2 ratio) -1 0 1 2at 52.682 kb on - strand, within Dshi_4205at 53.315 kb on + strand, within Dshi_4205at 53.350 kb on - strand, within Dshi_4205at 53.354 kb on - strand, within Dshi_4205at 53.398 kb on - strandat 53.578 kb on + strandat 53.812 kb on + strand, within Dshi_4206at 53.964 kb on + strand, within Dshi_4206at 54.168 kb on + strand, within Dshi_4206at 54.271 kb on + strand, within Dshi_4206at 54.644 kb on + strandat 54.747 kb on + strand, within Dshi_4207at 54.814 kb on + strand, within Dshi_4207at 54.883 kb on + strand, within Dshi_4207at 54.883 kb on + strand, within Dshi_4207at 54.929 kb on + strand, within Dshi_4207at 55.157 kb on + strand, within Dshi_4207at 55.413 kb on + strand, within Dshi_4207at 55.475 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.32 mM
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52,682 - Dshi_4205 0.37 +0.2
53,315 + Dshi_4205 0.84 +2.1
53,350 - Dshi_4205 0.87 +0.4
53,354 - Dshi_4205 0.87 -0.6
53,398 - +0.5
53,578 + +0.2
53,812 + Dshi_4206 0.24 -1.5
53,964 + Dshi_4206 0.41 -1.2
54,168 + Dshi_4206 0.63 +0.8
54,271 + Dshi_4206 0.74 -1.4
54,644 + +1.1
54,747 + Dshi_4207 0.17 -0.9
54,814 + Dshi_4207 0.24 -0.2
54,883 + Dshi_4207 0.31 -0.2
54,883 + Dshi_4207 0.31 +0.1
54,929 + Dshi_4207 0.36 -0.6
55,157 + Dshi_4207 0.59 +1.4
55,413 + Dshi_4207 0.86 +1.0
55,475 + +1.8

Or see this region's nucleotide sequence