Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2030

Experiment: m.b. copper (II) chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2029 and Dshi_2030 are separated by 160 nucleotidesDshi_2030 and Dshi_2031 are separated by 11 nucleotides Dshi_2029: Dshi_2029 - transcriptional regulator, LacI family (RefSeq), at 2,149,164 to 2,150,222 _2029 Dshi_2030: Dshi_2030 - hypothetical protein (RefSeq), at 2,150,383 to 2,150,574 _2030 Dshi_2031: Dshi_2031 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 2,150,586 to 2,151,734 _2031 Position (kb) 2150 2151Strain fitness (log2 ratio) -1 0 1at 2149.451 kb on - strand, within Dshi_2029at 2149.471 kb on + strand, within Dshi_2029at 2149.619 kb on - strand, within Dshi_2029at 2149.702 kb on - strand, within Dshi_2029at 2149.729 kb on + strand, within Dshi_2029at 2149.743 kb on - strand, within Dshi_2029at 2149.754 kb on - strand, within Dshi_2029at 2149.785 kb on - strand, within Dshi_2029at 2149.820 kb on + strand, within Dshi_2029at 2149.873 kb on - strand, within Dshi_2029at 2150.063 kb on + strand, within Dshi_2029at 2150.176 kb on - strandat 2150.183 kb on - strandat 2150.200 kb on - strandat 2150.276 kb on + strandat 2150.433 kb on + strand, within Dshi_2030at 2150.479 kb on - strand, within Dshi_2030at 2150.526 kb on + strand, within Dshi_2030at 2150.701 kb on - strand, within Dshi_2031at 2150.701 kb on - strand, within Dshi_2031at 2150.764 kb on + strand, within Dshi_2031at 2150.779 kb on + strand, within Dshi_2031at 2150.790 kb on - strand, within Dshi_2031at 2150.799 kb on + strand, within Dshi_2031at 2150.910 kb on + strand, within Dshi_2031at 2150.925 kb on + strand, within Dshi_2031at 2150.925 kb on + strand, within Dshi_2031at 2150.989 kb on + strand, within Dshi_2031at 2151.069 kb on + strand, within Dshi_2031at 2151.151 kb on + strand, within Dshi_2031at 2151.253 kb on + strand, within Dshi_2031at 2151.313 kb on - strand, within Dshi_2031at 2151.432 kb on - strand, within Dshi_2031at 2151.442 kb on - strand, within Dshi_2031at 2151.446 kb on + strand, within Dshi_2031at 2151.538 kb on + strand, within Dshi_2031at 2151.538 kb on + strand, within Dshi_2031at 2151.538 kb on + strand, within Dshi_2031at 2151.538 kb on + strand, within Dshi_2031

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.32 mM
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2,149,451 - Dshi_2029 0.27 -0.2
2,149,471 + Dshi_2029 0.29 +0.5
2,149,619 - Dshi_2029 0.43 -0.5
2,149,702 - Dshi_2029 0.51 -0.3
2,149,729 + Dshi_2029 0.53 +0.2
2,149,743 - Dshi_2029 0.55 +0.9
2,149,754 - Dshi_2029 0.56 -1.1
2,149,785 - Dshi_2029 0.59 -1.1
2,149,820 + Dshi_2029 0.62 -0.1
2,149,873 - Dshi_2029 0.67 -0.1
2,150,063 + Dshi_2029 0.85 -0.4
2,150,176 - -0.1
2,150,183 - -0.6
2,150,200 - -0.8
2,150,276 + +1.5
2,150,433 + Dshi_2030 0.26 +0.9
2,150,479 - Dshi_2030 0.50 -1.7
2,150,526 + Dshi_2030 0.74 -1.1
2,150,701 - Dshi_2031 0.10 -1.4
2,150,701 - Dshi_2031 0.10 -0.9
2,150,764 + Dshi_2031 0.15 +0.5
2,150,779 + Dshi_2031 0.17 -0.0
2,150,790 - Dshi_2031 0.18 +0.0
2,150,799 + Dshi_2031 0.19 +0.9
2,150,910 + Dshi_2031 0.28 -0.1
2,150,925 + Dshi_2031 0.30 -0.1
2,150,925 + Dshi_2031 0.30 -0.5
2,150,989 + Dshi_2031 0.35 +0.1
2,151,069 + Dshi_2031 0.42 -0.1
2,151,151 + Dshi_2031 0.49 -0.7
2,151,253 + Dshi_2031 0.58 -0.5
2,151,313 - Dshi_2031 0.63 +0.0
2,151,432 - Dshi_2031 0.74 +0.5
2,151,442 - Dshi_2031 0.74 -0.1
2,151,446 + Dshi_2031 0.75 -1.7
2,151,538 + Dshi_2031 0.83 -0.9
2,151,538 + Dshi_2031 0.83 -0.5
2,151,538 + Dshi_2031 0.83 -0.2
2,151,538 + Dshi_2031 0.83 -0.4

Or see this region's nucleotide sequence