Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1457

Experiment: m.b. copper (II) chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1455 and Dshi_1456 overlap by 1 nucleotidesDshi_1456 and Dshi_1457 are separated by 48 nucleotidesDshi_1457 and Dshi_1458 overlap by 50 nucleotidesDshi_1458 and Dshi_6026 are separated by 67 nucleotidesDshi_6026 and Dshi_1459 are separated by 155 nucleotides Dshi_1455: Dshi_1455 - transposase (RefSeq), at 1,513,747 to 1,513,896 _1455 Dshi_1456: Dshi_1456 - Integrase catalytic region (RefSeq), at 1,513,896 to 1,514,609 _1456 Dshi_1457: Dshi_1457 - type III restriction protein res subunit (RefSeq), at 1,514,658 to 1,516,022 _1457 Dshi_1458: Dshi_1458 - site-specific recombinase, phage integrase family (RefSeq), at 1,515,973 to 1,516,368 _1458 Dshi_6026: Dshi_6026 - tRNA-Ser (RefSeq), at 1,516,436 to 1,516,524 _6026 Dshi_1459: Dshi_1459 - hypothetical protein (RefSeq), at 1,516,680 to 1,517,501 _1459 Position (kb) 1514 1515 1516 1517Strain fitness (log2 ratio) -2 -1 0 1 2at 1513.729 kb on + strandat 1513.787 kb on + strand, within Dshi_1455at 1513.795 kb on - strand, within Dshi_1455at 1513.898 kb on - strandat 1513.933 kb on - strandat 1514.072 kb on + strand, within Dshi_1456at 1514.072 kb on + strand, within Dshi_1456at 1514.080 kb on - strand, within Dshi_1456at 1514.127 kb on - strand, within Dshi_1456at 1514.271 kb on - strand, within Dshi_1456at 1514.315 kb on - strand, within Dshi_1456at 1514.315 kb on - strand, within Dshi_1456at 1514.466 kb on + strand, within Dshi_1456at 1514.469 kb on - strand, within Dshi_1456at 1514.469 kb on - strand, within Dshi_1456at 1514.474 kb on - strand, within Dshi_1456at 1514.525 kb on + strand, within Dshi_1456at 1514.569 kb on - strandat 1514.573 kb on - strandat 1514.673 kb on + strandat 1514.736 kb on + strandat 1514.788 kb on - strandat 1514.944 kb on - strand, within Dshi_1457at 1514.960 kb on - strand, within Dshi_1457at 1514.985 kb on + strand, within Dshi_1457at 1514.993 kb on - strand, within Dshi_1457at 1515.019 kb on + strand, within Dshi_1457at 1515.038 kb on - strand, within Dshi_1457at 1515.064 kb on - strand, within Dshi_1457at 1515.086 kb on + strand, within Dshi_1457at 1515.094 kb on + strand, within Dshi_1457at 1515.094 kb on - strand, within Dshi_1457at 1515.142 kb on - strand, within Dshi_1457at 1515.178 kb on - strand, within Dshi_1457at 1515.278 kb on + strand, within Dshi_1457at 1515.308 kb on - strand, within Dshi_1457at 1515.352 kb on + strand, within Dshi_1457at 1515.352 kb on + strand, within Dshi_1457at 1515.353 kb on - strand, within Dshi_1457at 1515.353 kb on - strand, within Dshi_1457at 1515.476 kb on + strand, within Dshi_1457at 1515.529 kb on - strand, within Dshi_1457at 1515.531 kb on + strand, within Dshi_1457at 1515.604 kb on + strand, within Dshi_1457at 1515.690 kb on - strand, within Dshi_1457at 1515.776 kb on + strand, within Dshi_1457at 1515.842 kb on + strand, within Dshi_1457at 1515.871 kb on - strand, within Dshi_1457at 1516.023 kb on - strand, within Dshi_1458at 1516.172 kb on - strand, within Dshi_1458at 1516.192 kb on - strand, within Dshi_1458at 1516.299 kb on + strand, within Dshi_1458at 1516.299 kb on + strand, within Dshi_1458at 1516.302 kb on - strand, within Dshi_1458at 1516.310 kb on + strand, within Dshi_1458at 1516.594 kb on - strandat 1516.709 kb on - strandat 1516.732 kb on - strandat 1516.817 kb on + strand, within Dshi_1459at 1516.951 kb on - strand, within Dshi_1459at 1516.979 kb on + strand, within Dshi_1459

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.32 mM
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1,513,729 + +1.1
1,513,787 + Dshi_1455 0.27 -0.2
1,513,795 - Dshi_1455 0.32 +0.8
1,513,898 - -0.5
1,513,933 - +0.0
1,514,072 + Dshi_1456 0.25 +1.1
1,514,072 + Dshi_1456 0.25 +0.8
1,514,080 - Dshi_1456 0.26 +0.1
1,514,127 - Dshi_1456 0.32 +0.2
1,514,271 - Dshi_1456 0.53 -0.4
1,514,315 - Dshi_1456 0.59 +0.9
1,514,315 - Dshi_1456 0.59 -0.3
1,514,466 + Dshi_1456 0.80 -0.0
1,514,469 - Dshi_1456 0.80 -0.1
1,514,469 - Dshi_1456 0.80 -0.4
1,514,474 - Dshi_1456 0.81 +0.3
1,514,525 + Dshi_1456 0.88 -0.8
1,514,569 - +0.2
1,514,573 - +0.3
1,514,673 + -0.1
1,514,736 + -0.5
1,514,788 - -0.4
1,514,944 - Dshi_1457 0.21 +0.8
1,514,960 - Dshi_1457 0.22 -0.2
1,514,985 + Dshi_1457 0.24 -0.5
1,514,993 - Dshi_1457 0.25 +0.7
1,515,019 + Dshi_1457 0.26 +0.2
1,515,038 - Dshi_1457 0.28 +1.0
1,515,064 - Dshi_1457 0.30 +0.5
1,515,086 + Dshi_1457 0.31 +2.3
1,515,094 + Dshi_1457 0.32 -0.2
1,515,094 - Dshi_1457 0.32 -0.6
1,515,142 - Dshi_1457 0.35 +0.1
1,515,178 - Dshi_1457 0.38 +0.3
1,515,278 + Dshi_1457 0.45 +1.8
1,515,308 - Dshi_1457 0.48 -0.0
1,515,352 + Dshi_1457 0.51 -0.0
1,515,352 + Dshi_1457 0.51 -0.2
1,515,353 - Dshi_1457 0.51 -0.2
1,515,353 - Dshi_1457 0.51 -0.3
1,515,476 + Dshi_1457 0.60 +0.1
1,515,529 - Dshi_1457 0.64 -2.2
1,515,531 + Dshi_1457 0.64 +0.8
1,515,604 + Dshi_1457 0.69 +0.1
1,515,690 - Dshi_1457 0.76 -0.1
1,515,776 + Dshi_1457 0.82 +0.6
1,515,842 + Dshi_1457 0.87 +0.8
1,515,871 - Dshi_1457 0.89 -0.3
1,516,023 - Dshi_1458 0.13 -0.4
1,516,172 - Dshi_1458 0.50 -0.4
1,516,192 - Dshi_1458 0.55 -0.9
1,516,299 + Dshi_1458 0.82 -0.0
1,516,299 + Dshi_1458 0.82 +0.1
1,516,302 - Dshi_1458 0.83 +0.3
1,516,310 + Dshi_1458 0.85 -0.1
1,516,594 - -0.0
1,516,709 - -1.4
1,516,732 - +0.8
1,516,817 + Dshi_1459 0.17 -0.7
1,516,951 - Dshi_1459 0.33 +0.4
1,516,979 + Dshi_1459 0.36 +0.3

Or see this region's nucleotide sequence