Experiment: m.b. copper (II) chloride 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1278 and Dshi_1279 are separated by 11 nucleotides Dshi_1279 and Dshi_1280 are separated by 16 nucleotides
Dshi_1278: Dshi_1278 - Phytanoyl-CoA dioxygenase (RefSeq), at 1,327,313 to 1,328,482
_1278
Dshi_1279: Dshi_1279 - Myo-inositol catabolism IolB domain protein (RefSeq), at 1,328,494 to 1,329,306
_1279
Dshi_1280: Dshi_1280 - aminotransferase class V (RefSeq), at 1,329,323 to 1,330,588
_1280
Position (kb)
1328
1329
1330 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1327.537 kb on + strand, within Dshi_1278 at 1327.539 kb on + strand, within Dshi_1278 at 1327.547 kb on - strand, within Dshi_1278 at 1327.565 kb on + strand, within Dshi_1278 at 1327.644 kb on - strand, within Dshi_1278 at 1327.768 kb on + strand, within Dshi_1278 at 1327.827 kb on + strand, within Dshi_1278 at 1327.930 kb on - strand, within Dshi_1278 at 1327.961 kb on + strand, within Dshi_1278 at 1328.057 kb on - strand, within Dshi_1278 at 1328.059 kb on - strand, within Dshi_1278 at 1328.425 kb on + strand at 1328.515 kb on + strand at 1328.573 kb on + strand at 1328.630 kb on - strand, within Dshi_1279 at 1328.664 kb on - strand, within Dshi_1279 at 1328.715 kb on - strand, within Dshi_1279 at 1328.855 kb on + strand, within Dshi_1279 at 1328.965 kb on + strand, within Dshi_1279 at 1329.000 kb on - strand, within Dshi_1279 at 1329.021 kb on - strand, within Dshi_1279 at 1329.107 kb on - strand, within Dshi_1279 at 1329.157 kb on - strand, within Dshi_1279 at 1329.180 kb on + strand, within Dshi_1279 at 1329.330 kb on - strand at 1329.440 kb on + strand at 1329.616 kb on + strand, within Dshi_1280 at 1329.753 kb on - strand, within Dshi_1280 at 1329.763 kb on + strand, within Dshi_1280 at 1329.885 kb on + strand, within Dshi_1280 at 1329.961 kb on + strand, within Dshi_1280 at 1330.173 kb on - strand, within Dshi_1280 at 1330.238 kb on + strand, within Dshi_1280 at 1330.252 kb on + strand, within Dshi_1280 at 1330.258 kb on - strand, within Dshi_1280 at 1330.260 kb on - strand, within Dshi_1280
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.32 mM remove 1,327,537 + Dshi_1278 0.19 -1.1 1,327,539 + Dshi_1278 0.19 +1.2 1,327,547 - Dshi_1278 0.20 -0.1 1,327,565 + Dshi_1278 0.22 +0.3 1,327,644 - Dshi_1278 0.28 +0.6 1,327,768 + Dshi_1278 0.39 +0.2 1,327,827 + Dshi_1278 0.44 +0.9 1,327,930 - Dshi_1278 0.53 +0.6 1,327,961 + Dshi_1278 0.55 -0.0 1,328,057 - Dshi_1278 0.64 -0.4 1,328,059 - Dshi_1278 0.64 +0.9 1,328,425 + -0.5 1,328,515 + -0.1 1,328,573 + +0.6 1,328,630 - Dshi_1279 0.17 -0.6 1,328,664 - Dshi_1279 0.21 +0.2 1,328,715 - Dshi_1279 0.27 +0.4 1,328,855 + Dshi_1279 0.44 -1.7 1,328,965 + Dshi_1279 0.58 -0.1 1,329,000 - Dshi_1279 0.62 -0.1 1,329,021 - Dshi_1279 0.65 -2.4 1,329,107 - Dshi_1279 0.75 -0.1 1,329,157 - Dshi_1279 0.82 +0.9 1,329,180 + Dshi_1279 0.84 -0.1 1,329,330 - -0.1 1,329,440 + +0.1 1,329,616 + Dshi_1280 0.23 -0.1 1,329,753 - Dshi_1280 0.34 +0.2 1,329,763 + Dshi_1280 0.35 -0.1 1,329,885 + Dshi_1280 0.44 -0.1 1,329,961 + Dshi_1280 0.50 -1.7 1,330,173 - Dshi_1280 0.67 -1.0 1,330,238 + Dshi_1280 0.72 -0.2 1,330,252 + Dshi_1280 0.73 -0.4 1,330,258 - Dshi_1280 0.74 -3.4 1,330,260 - Dshi_1280 0.74 -0.4
Or see this region's nucleotide sequence