Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1277

Experiment: m.b. copper (II) chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1275 and Dshi_1276 are separated by 1 nucleotidesDshi_1276 and Dshi_1277 overlap by 14 nucleotidesDshi_1277 and Dshi_1278 overlap by 4 nucleotides Dshi_1275: Dshi_1275 - Monosaccharide-transporting ATPase (RefSeq), at 1,325,167 to 1,326,291 _1275 Dshi_1276: Dshi_1276 - ABC transporter related (RefSeq), at 1,326,293 to 1,327,087 _1276 Dshi_1277: Dshi_1277 - hypothetical protein (RefSeq), at 1,327,074 to 1,327,316 _1277 Dshi_1278: Dshi_1278 - Phytanoyl-CoA dioxygenase (RefSeq), at 1,327,313 to 1,328,482 _1278 Position (kb) 1327 1328Strain fitness (log2 ratio) -1 0 1 2at 1326.146 kb on + strand, within Dshi_1275at 1326.265 kb on - strandat 1326.265 kb on - strandat 1326.306 kb on - strandat 1326.306 kb on - strandat 1326.459 kb on + strand, within Dshi_1276at 1326.692 kb on - strand, within Dshi_1276at 1326.731 kb on - strand, within Dshi_1276at 1326.786 kb on - strand, within Dshi_1276at 1326.951 kb on + strand, within Dshi_1276at 1326.966 kb on + strand, within Dshi_1276at 1326.987 kb on + strand, within Dshi_1276at 1327.114 kb on - strand, within Dshi_1277at 1327.178 kb on - strand, within Dshi_1277at 1327.195 kb on + strand, within Dshi_1277at 1327.195 kb on + strand, within Dshi_1277at 1327.203 kb on - strand, within Dshi_1277at 1327.238 kb on - strand, within Dshi_1277at 1327.322 kb on + strandat 1327.362 kb on - strandat 1327.537 kb on + strand, within Dshi_1278at 1327.539 kb on + strand, within Dshi_1278at 1327.547 kb on - strand, within Dshi_1278at 1327.565 kb on + strand, within Dshi_1278at 1327.644 kb on - strand, within Dshi_1278at 1327.768 kb on + strand, within Dshi_1278at 1327.827 kb on + strand, within Dshi_1278at 1327.930 kb on - strand, within Dshi_1278at 1327.961 kb on + strand, within Dshi_1278at 1328.057 kb on - strand, within Dshi_1278at 1328.059 kb on - strand, within Dshi_1278

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.32 mM
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1,326,146 + Dshi_1275 0.87 -0.1
1,326,265 - -0.1
1,326,265 - +0.5
1,326,306 - +0.2
1,326,306 - -0.7
1,326,459 + Dshi_1276 0.21 +0.1
1,326,692 - Dshi_1276 0.50 +0.9
1,326,731 - Dshi_1276 0.55 +0.4
1,326,786 - Dshi_1276 0.62 -0.3
1,326,951 + Dshi_1276 0.83 +0.3
1,326,966 + Dshi_1276 0.85 -0.1
1,326,987 + Dshi_1276 0.87 -0.9
1,327,114 - Dshi_1277 0.16 -0.0
1,327,178 - Dshi_1277 0.43 +1.9
1,327,195 + Dshi_1277 0.50 +1.5
1,327,195 + Dshi_1277 0.50 -1.5
1,327,203 - Dshi_1277 0.53 -0.0
1,327,238 - Dshi_1277 0.67 +1.0
1,327,322 + -0.7
1,327,362 - -0.2
1,327,537 + Dshi_1278 0.19 -1.1
1,327,539 + Dshi_1278 0.19 +1.2
1,327,547 - Dshi_1278 0.20 -0.1
1,327,565 + Dshi_1278 0.22 +0.3
1,327,644 - Dshi_1278 0.28 +0.6
1,327,768 + Dshi_1278 0.39 +0.2
1,327,827 + Dshi_1278 0.44 +0.9
1,327,930 - Dshi_1278 0.53 +0.6
1,327,961 + Dshi_1278 0.55 -0.0
1,328,057 - Dshi_1278 0.64 -0.4
1,328,059 - Dshi_1278 0.64 +0.9

Or see this region's nucleotide sequence