Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1103

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1102 and Ga0059261_1103 are separated by 62 nucleotidesGa0059261_1103 and Ga0059261_1104 are separated by 2 nucleotidesGa0059261_1104 and Ga0059261_1105 are separated by 7 nucleotides Ga0059261_1102: Ga0059261_1102 - Flagellar basal-body P-ring protein, at 1,133,193 to 1,134,317 _1102 Ga0059261_1103: Ga0059261_1103 - flagellar biosynthetic protein FlhB, at 1,134,380 to 1,135,456 _1103 Ga0059261_1104: Ga0059261_1104 - flagellar biosynthetic protein FliR, at 1,135,459 to 1,136,214 _1104 Ga0059261_1105: Ga0059261_1105 - Flagellar biosynthesis pathway, component FliQ, at 1,136,222 to 1,136,485 _1105 Position (kb) 1134 1135 1136Strain fitness (log2 ratio) -2 -1 0 1 2at 1133.559 kb on + strand, within Ga0059261_1102at 1133.567 kb on + strand, within Ga0059261_1102at 1133.567 kb on + strand, within Ga0059261_1102at 1133.567 kb on + strand, within Ga0059261_1102at 1133.567 kb on + strand, within Ga0059261_1102at 1133.567 kb on + strand, within Ga0059261_1102at 1133.568 kb on - strand, within Ga0059261_1102at 1133.568 kb on - strand, within Ga0059261_1102at 1133.568 kb on - strand, within Ga0059261_1102at 1133.568 kb on - strand, within Ga0059261_1102at 1133.890 kb on + strand, within Ga0059261_1102at 1133.890 kb on + strand, within Ga0059261_1102at 1133.890 kb on + strand, within Ga0059261_1102at 1133.890 kb on + strand, within Ga0059261_1102at 1133.890 kb on + strand, within Ga0059261_1102at 1133.890 kb on + strand, within Ga0059261_1102at 1133.890 kb on + strand, within Ga0059261_1102at 1133.891 kb on - strand, within Ga0059261_1102at 1133.891 kb on - strand, within Ga0059261_1102at 1133.891 kb on - strand, within Ga0059261_1102at 1133.891 kb on - strand, within Ga0059261_1102at 1133.976 kb on + strand, within Ga0059261_1102at 1133.976 kb on + strandat 1133.976 kb on + strand, within Ga0059261_1102at 1133.976 kb on + strand, within Ga0059261_1102at 1133.976 kb on + strand, within Ga0059261_1102at 1133.976 kb on + strand, within Ga0059261_1102at 1133.976 kb on + strand, within Ga0059261_1102at 1133.977 kb on - strand, within Ga0059261_1102at 1133.977 kb on - strand, within Ga0059261_1102at 1134.320 kb on + strandat 1134.320 kb on + strandat 1134.321 kb on - strandat 1134.321 kb on - strandat 1134.321 kb on - strandat 1134.327 kb on + strandat 1134.329 kb on + strandat 1134.329 kb on + strandat 1134.330 kb on - strandat 1134.330 kb on - strandat 1134.330 kb on - strandat 1134.381 kb on + strandat 1134.382 kb on - strandat 1134.420 kb on + strandat 1134.420 kb on + strandat 1134.421 kb on - strandat 1134.421 kb on - strandat 1134.421 kb on - strandat 1134.447 kb on + strandat 1134.447 kb on + strandat 1134.448 kb on - strandat 1134.448 kb on - strandat 1134.448 kb on - strandat 1134.490 kb on - strand, within Ga0059261_1103at 1134.621 kb on + strand, within Ga0059261_1103at 1134.621 kb on + strand, within Ga0059261_1103at 1134.621 kb on + strand, within Ga0059261_1103at 1134.622 kb on - strandat 1134.622 kb on - strand, within Ga0059261_1103at 1134.622 kb on - strand, within Ga0059261_1103at 1134.622 kb on - strand, within Ga0059261_1103at 1134.622 kb on - strand, within Ga0059261_1103at 1134.622 kb on - strand, within Ga0059261_1103at 1134.639 kb on + strand, within Ga0059261_1103at 1134.640 kb on - strand, within Ga0059261_1103at 1134.763 kb on + strand, within Ga0059261_1103at 1134.763 kb on + strand, within Ga0059261_1103at 1134.763 kb on + strand, within Ga0059261_1103at 1134.763 kb on + strand, within Ga0059261_1103at 1134.764 kb on - strand, within Ga0059261_1103at 1134.764 kb on - strand, within Ga0059261_1103at 1134.764 kb on - strand, within Ga0059261_1103at 1134.764 kb on - strand, within Ga0059261_1103at 1134.764 kb on - strand, within Ga0059261_1103at 1134.825 kb on + strand, within Ga0059261_1103at 1134.825 kb on + strand, within Ga0059261_1103at 1134.825 kb on + strand, within Ga0059261_1103at 1134.826 kb on - strand, within Ga0059261_1103at 1134.893 kb on - strand, within Ga0059261_1103at 1134.925 kb on + strand, within Ga0059261_1103at 1134.925 kb on + strand, within Ga0059261_1103at 1134.925 kb on + strand, within Ga0059261_1103at 1134.927 kb on + strand, within Ga0059261_1103at 1134.927 kb on + strand, within Ga0059261_1103at 1134.928 kb on - strand, within Ga0059261_1103at 1134.928 kb on - strand, within Ga0059261_1103at 1134.975 kb on + strand, within Ga0059261_1103at 1134.975 kb on + strand, within Ga0059261_1103at 1134.976 kb on - strand, within Ga0059261_1103at 1134.976 kb on - strand, within Ga0059261_1103at 1134.976 kb on - strand, within Ga0059261_1103at 1135.282 kb on + strand, within Ga0059261_1103at 1135.282 kb on + strand, within Ga0059261_1103at 1135.283 kb on - strand, within Ga0059261_1103at 1135.283 kb on - strand, within Ga0059261_1103at 1135.646 kb on + strandat 1135.646 kb on + strand, within Ga0059261_1104at 1135.646 kb on + strand, within Ga0059261_1104at 1135.647 kb on - strand, within Ga0059261_1104at 1135.647 kb on - strand, within Ga0059261_1104at 1135.647 kb on - strand, within Ga0059261_1104at 1135.647 kb on - strand, within Ga0059261_1104at 1135.647 kb on - strand, within Ga0059261_1104at 1135.761 kb on + strand, within Ga0059261_1104at 1135.761 kb on + strand, within Ga0059261_1104at 1135.761 kb on + strand, within Ga0059261_1104at 1135.761 kb on + strand, within Ga0059261_1104at 1135.762 kb on - strand, within Ga0059261_1104at 1135.762 kb on - strand, within Ga0059261_1104at 1135.762 kb on - strand, within Ga0059261_1104at 1135.762 kb on - strand, within Ga0059261_1104at 1135.762 kb on - strand, within Ga0059261_1104at 1135.763 kb on + strand, within Ga0059261_1104at 1135.763 kb on + strand, within Ga0059261_1104at 1135.763 kb on + strand, within Ga0059261_1104at 1135.763 kb on + strand, within Ga0059261_1104at 1135.763 kb on + strand, within Ga0059261_1104at 1135.763 kb on + strand, within Ga0059261_1104at 1135.763 kb on + strand, within Ga0059261_1104at 1135.764 kb on - strand, within Ga0059261_1104at 1135.764 kb on - strandat 1135.764 kb on - strand, within Ga0059261_1104at 1135.764 kb on - strand, within Ga0059261_1104at 1135.764 kb on - strand, within Ga0059261_1104at 1135.764 kb on - strand, within Ga0059261_1104at 1135.764 kb on - strand, within Ga0059261_1104at 1136.067 kb on - strand, within Ga0059261_1104at 1136.152 kb on + strandat 1136.152 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,133,559 + Ga0059261_1102 0.33 -2.2
1,133,567 + Ga0059261_1102 0.33 +0.8
1,133,567 + Ga0059261_1102 0.33 +1.8
1,133,567 + Ga0059261_1102 0.33 -0.1
1,133,567 + Ga0059261_1102 0.33 +0.1
1,133,567 + Ga0059261_1102 0.33 +0.1
1,133,568 - Ga0059261_1102 0.33 -0.2
1,133,568 - Ga0059261_1102 0.33 +0.1
1,133,568 - Ga0059261_1102 0.33 +0.4
1,133,568 - Ga0059261_1102 0.33 -0.4
1,133,890 + Ga0059261_1102 0.62 +0.0
1,133,890 + Ga0059261_1102 0.62 +0.4
1,133,890 + Ga0059261_1102 0.62 +0.8
1,133,890 + Ga0059261_1102 0.62 +0.2
1,133,890 + Ga0059261_1102 0.62 -0.9
1,133,890 + Ga0059261_1102 0.62 +0.2
1,133,890 + Ga0059261_1102 0.62 -0.4
1,133,891 - Ga0059261_1102 0.62 -0.5
1,133,891 - Ga0059261_1102 0.62 +0.4
1,133,891 - Ga0059261_1102 0.62 -0.7
1,133,891 - Ga0059261_1102 0.62 +0.9
1,133,976 + Ga0059261_1102 0.70 -0.6
1,133,976 + +0.4
1,133,976 + Ga0059261_1102 0.70 -0.5
1,133,976 + Ga0059261_1102 0.70 -2.3
1,133,976 + Ga0059261_1102 0.70 +0.0
1,133,976 + Ga0059261_1102 0.70 -0.4
1,133,976 + Ga0059261_1102 0.70 +0.1
1,133,977 - Ga0059261_1102 0.70 -1.1
1,133,977 - Ga0059261_1102 0.70 -0.8
1,134,320 + -0.1
1,134,320 + +0.0
1,134,321 - -0.1
1,134,321 - -0.0
1,134,321 - -0.4
1,134,327 + -0.5
1,134,329 + +0.2
1,134,329 + -0.6
1,134,330 - -1.1
1,134,330 - -0.7
1,134,330 - -0.6
1,134,381 + -0.4
1,134,382 - +0.0
1,134,420 + -0.9
1,134,420 + -0.3
1,134,421 - +0.4
1,134,421 - -0.2
1,134,421 - +1.1
1,134,447 + +0.1
1,134,447 + +0.1
1,134,448 - -0.2
1,134,448 - +0.1
1,134,448 - -0.0
1,134,490 - Ga0059261_1103 0.10 +0.3
1,134,621 + Ga0059261_1103 0.22 +1.0
1,134,621 + Ga0059261_1103 0.22 +0.1
1,134,621 + Ga0059261_1103 0.22 +0.6
1,134,622 - -0.2
1,134,622 - Ga0059261_1103 0.22 -0.8
1,134,622 - Ga0059261_1103 0.22 +0.3
1,134,622 - Ga0059261_1103 0.22 -1.2
1,134,622 - Ga0059261_1103 0.22 -0.0
1,134,622 - Ga0059261_1103 0.22 +0.1
1,134,639 + Ga0059261_1103 0.24 -0.4
1,134,640 - Ga0059261_1103 0.24 +0.2
1,134,763 + Ga0059261_1103 0.36 +1.3
1,134,763 + Ga0059261_1103 0.36 +0.3
1,134,763 + Ga0059261_1103 0.36 -0.1
1,134,763 + Ga0059261_1103 0.36 +1.1
1,134,764 - Ga0059261_1103 0.36 +0.3
1,134,764 - Ga0059261_1103 0.36 +0.2
1,134,764 - Ga0059261_1103 0.36 +0.1
1,134,764 - Ga0059261_1103 0.36 +0.2
1,134,764 - Ga0059261_1103 0.36 +0.1
1,134,825 + Ga0059261_1103 0.41 +0.2
1,134,825 + Ga0059261_1103 0.41 +0.1
1,134,825 + Ga0059261_1103 0.41 +0.6
1,134,826 - Ga0059261_1103 0.41 -0.0
1,134,893 - Ga0059261_1103 0.48 -0.4
1,134,925 + Ga0059261_1103 0.51 -0.0
1,134,925 + Ga0059261_1103 0.51 -2.0
1,134,925 + Ga0059261_1103 0.51 +0.7
1,134,927 + Ga0059261_1103 0.51 +1.0
1,134,927 + Ga0059261_1103 0.51 -0.3
1,134,928 - Ga0059261_1103 0.51 -0.6
1,134,928 - Ga0059261_1103 0.51 +0.4
1,134,975 + Ga0059261_1103 0.55 -1.2
1,134,975 + Ga0059261_1103 0.55 -0.6
1,134,976 - Ga0059261_1103 0.55 +0.2
1,134,976 - Ga0059261_1103 0.55 +0.9
1,134,976 - Ga0059261_1103 0.55 -0.8
1,135,282 + Ga0059261_1103 0.84 -0.7
1,135,282 + Ga0059261_1103 0.84 +0.1
1,135,283 - Ga0059261_1103 0.84 +0.5
1,135,283 - Ga0059261_1103 0.84 +0.8
1,135,646 + +0.8
1,135,646 + Ga0059261_1104 0.25 +0.4
1,135,646 + Ga0059261_1104 0.25 -0.5
1,135,647 - Ga0059261_1104 0.25 +0.3
1,135,647 - Ga0059261_1104 0.25 +0.8
1,135,647 - Ga0059261_1104 0.25 -0.4
1,135,647 - Ga0059261_1104 0.25 -0.1
1,135,647 - Ga0059261_1104 0.25 -0.2
1,135,761 + Ga0059261_1104 0.40 -0.4
1,135,761 + Ga0059261_1104 0.40 -0.9
1,135,761 + Ga0059261_1104 0.40 -1.3
1,135,761 + Ga0059261_1104 0.40 +0.5
1,135,762 - Ga0059261_1104 0.40 -0.2
1,135,762 - Ga0059261_1104 0.40 +0.0
1,135,762 - Ga0059261_1104 0.40 -0.1
1,135,762 - Ga0059261_1104 0.40 +1.0
1,135,762 - Ga0059261_1104 0.40 +0.7
1,135,763 + Ga0059261_1104 0.40 +0.3
1,135,763 + Ga0059261_1104 0.40 -0.4
1,135,763 + Ga0059261_1104 0.40 -0.1
1,135,763 + Ga0059261_1104 0.40 +0.9
1,135,763 + Ga0059261_1104 0.40 +1.6
1,135,763 + Ga0059261_1104 0.40 +0.2
1,135,763 + Ga0059261_1104 0.40 +0.5
1,135,764 - Ga0059261_1104 0.40 -0.3
1,135,764 - +0.8
1,135,764 - Ga0059261_1104 0.40 -0.2
1,135,764 - Ga0059261_1104 0.40 -0.5
1,135,764 - Ga0059261_1104 0.40 +0.6
1,135,764 - Ga0059261_1104 0.40 -0.1
1,135,764 - Ga0059261_1104 0.40 -0.1
1,136,067 - Ga0059261_1104 0.80 -0.2
1,136,152 + +0.8
1,136,152 + -0.5

Or see this region's nucleotide sequence