Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS27925

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS27920 and AZOBR_RS27925 are separated by 11 nucleotidesAZOBR_RS27925 and AZOBR_RS27930 are separated by 13 nucleotides AZOBR_RS27920: AZOBR_RS27920 - xylose isomerase, at 433,599 to 434,906 _RS27920 AZOBR_RS27925: AZOBR_RS27925 - oxidoreductase, at 434,918 to 436,093 _RS27925 AZOBR_RS27930: AZOBR_RS27930 - AP endonuclease, at 436,107 to 437,162 _RS27930 Position (kb) 434 435 436 437Strain fitness (log2 ratio) -2 -1 0 1 2at 434.153 kb on - strand, within AZOBR_RS27920at 434.177 kb on - strand, within AZOBR_RS27920at 434.177 kb on - strand, within AZOBR_RS27920at 434.351 kb on - strand, within AZOBR_RS27920at 434.351 kb on - strand, within AZOBR_RS27920at 434.351 kb on - strand, within AZOBR_RS27920at 434.456 kb on - strand, within AZOBR_RS27920at 434.761 kb on + strand, within AZOBR_RS27920at 434.824 kb on + strandat 434.893 kb on + strandat 434.893 kb on + strandat 435.078 kb on + strand, within AZOBR_RS27925at 435.103 kb on - strand, within AZOBR_RS27925at 435.655 kb on - strand, within AZOBR_RS27925at 435.655 kb on - strand, within AZOBR_RS27925at 435.882 kb on + strand, within AZOBR_RS27925at 436.292 kb on - strand, within AZOBR_RS27930at 436.459 kb on + strand, within AZOBR_RS27930at 436.471 kb on + strand, within AZOBR_RS27930at 436.721 kb on - strand, within AZOBR_RS27930at 436.721 kb on - strandat 436.727 kb on - strand, within AZOBR_RS27930at 436.886 kb on - strand, within AZOBR_RS27930

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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434,153 - AZOBR_RS27920 0.42 +0.7
434,177 - AZOBR_RS27920 0.44 -0.3
434,177 - AZOBR_RS27920 0.44 -1.1
434,351 - AZOBR_RS27920 0.57 +0.6
434,351 - AZOBR_RS27920 0.57 +1.8
434,351 - AZOBR_RS27920 0.57 -0.9
434,456 - AZOBR_RS27920 0.66 +0.1
434,761 + AZOBR_RS27920 0.89 +1.7
434,824 + +0.5
434,893 + +0.7
434,893 + -0.4
435,078 + AZOBR_RS27925 0.14 -0.5
435,103 - AZOBR_RS27925 0.16 -0.7
435,655 - AZOBR_RS27925 0.63 +0.1
435,655 - AZOBR_RS27925 0.63 -0.9
435,882 + AZOBR_RS27925 0.82 -0.3
436,292 - AZOBR_RS27930 0.18 -1.1
436,459 + AZOBR_RS27930 0.33 +0.2
436,471 + AZOBR_RS27930 0.34 -2.3
436,721 - AZOBR_RS27930 0.58 -0.0
436,721 - +1.1
436,727 - AZOBR_RS27930 0.59 -1.0
436,886 - AZOBR_RS27930 0.74 +0.5

Or see this region's nucleotide sequence