Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS27900 and AZOBR_RS27905 are separated by 47 nucleotides AZOBR_RS27905 and AZOBR_RS27910 are separated by 112 nucleotides
AZOBR_RS27900: AZOBR_RS27900 - FAD-binding oxidoreductase, at 428,448 to 430,520
_RS27900
AZOBR_RS27905: AZOBR_RS27905 - 50S ribosomal protein L21, at 430,568 to 431,032
_RS27905
AZOBR_RS27910: AZOBR_RS27910 - LysR family transcriptional regulator, at 431,145 to 432,035
_RS27910
Position (kb) 430
431
432 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 429.606 kb on + strand, within AZOBR_RS27900 at 429.607 kb on - strand, within AZOBR_RS27900 at 429.607 kb on - strand, within AZOBR_RS27900 at 429.639 kb on + strand, within AZOBR_RS27900 at 430.005 kb on + strand, within AZOBR_RS27900 at 430.005 kb on + strand, within AZOBR_RS27900 at 430.005 kb on + strand, within AZOBR_RS27900 at 430.074 kb on + strand, within AZOBR_RS27900 at 430.075 kb on - strand, within AZOBR_RS27900 at 430.110 kb on + strand, within AZOBR_RS27900 at 430.111 kb on - strand, within AZOBR_RS27900 at 430.410 kb on + strand at 430.410 kb on + strand at 430.411 kb on - strand at 430.411 kb on - strand at 430.411 kb on - strand at 430.677 kb on - strand, within AZOBR_RS27905 at 430.775 kb on + strand, within AZOBR_RS27905 at 430.835 kb on + strand, within AZOBR_RS27905 at 430.836 kb on - strand, within AZOBR_RS27905 at 430.842 kb on - strand, within AZOBR_RS27905 at 431.088 kb on - strand at 431.403 kb on + strand, within AZOBR_RS27910 at 431.403 kb on + strand, within AZOBR_RS27910 at 431.403 kb on + strand, within AZOBR_RS27910 at 431.656 kb on - strand, within AZOBR_RS27910 at 431.656 kb on - strand, within AZOBR_RS27910
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 429,606 + AZOBR_RS27900 0.56 -0.9 429,607 - AZOBR_RS27900 0.56 -2.5 429,607 - AZOBR_RS27900 0.56 -0.5 429,639 + AZOBR_RS27900 0.57 +1.0 430,005 + AZOBR_RS27900 0.75 -1.7 430,005 + AZOBR_RS27900 0.75 +1.1 430,005 + AZOBR_RS27900 0.75 +0.9 430,074 + AZOBR_RS27900 0.78 +0.4 430,075 - AZOBR_RS27900 0.78 -0.8 430,110 + AZOBR_RS27900 0.80 -1.6 430,111 - AZOBR_RS27900 0.80 +1.2 430,410 + -0.6 430,410 + -0.1 430,411 - -0.7 430,411 - +1.7 430,411 - +1.6 430,677 - AZOBR_RS27905 0.23 -0.3 430,775 + AZOBR_RS27905 0.45 -0.7 430,835 + AZOBR_RS27905 0.57 +2.9 430,836 - AZOBR_RS27905 0.58 -1.1 430,842 - AZOBR_RS27905 0.59 +0.1 431,088 - -1.1 431,403 + AZOBR_RS27910 0.29 +0.2 431,403 + AZOBR_RS27910 0.29 -0.1 431,403 + AZOBR_RS27910 0.29 -0.8 431,656 - AZOBR_RS27910 0.57 +0.8 431,656 - AZOBR_RS27910 0.57 +0.3
Or see this region's nucleotide sequence