Experiment: Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29130 and AO356_29135 are separated by 126 nucleotides AO356_29135 and AO356_29140 are separated by 4 nucleotides
AO356_29130: AO356_29130 - MFS transporter, at 6,771,246 to 6,772,445
_29130
AO356_29135: AO356_29135 - RND transporter, at 6,772,572 to 6,775,103
_29135
AO356_29140: AO356_29140 - BNR domain-containing protein, at 6,775,108 to 6,776,211
_29140
Position (kb)
6772
6773
6774
6775
6776 Strain fitness (log2 ratio)
-2
-1
0
1 at 6771.755 kb on - strand, within AO356_29130 at 6771.812 kb on - strand, within AO356_29130 at 6771.932 kb on - strand, within AO356_29130 at 6772.057 kb on + strand, within AO356_29130 at 6772.057 kb on + strand, within AO356_29130 at 6772.058 kb on - strand, within AO356_29130 at 6772.060 kb on + strand, within AO356_29130 at 6772.183 kb on + strand, within AO356_29130 at 6772.341 kb on - strand at 6772.538 kb on + strand at 6772.589 kb on + strand at 6772.965 kb on - strand, within AO356_29135 at 6772.990 kb on + strand, within AO356_29135 at 6772.990 kb on + strand, within AO356_29135 at 6772.990 kb on + strand, within AO356_29135 at 6772.991 kb on - strand, within AO356_29135 at 6773.179 kb on + strand, within AO356_29135 at 6773.362 kb on + strand, within AO356_29135 at 6773.455 kb on + strand, within AO356_29135 at 6773.683 kb on + strand, within AO356_29135 at 6773.684 kb on - strand, within AO356_29135 at 6773.921 kb on - strand, within AO356_29135 at 6774.306 kb on + strand, within AO356_29135 at 6774.325 kb on + strand, within AO356_29135 at 6774.452 kb on - strand, within AO356_29135 at 6774.534 kb on + strand, within AO356_29135 at 6774.534 kb on + strand, within AO356_29135 at 6774.640 kb on + strand, within AO356_29135 at 6774.727 kb on + strand, within AO356_29135 at 6774.727 kb on + strand, within AO356_29135 at 6774.728 kb on - strand, within AO356_29135 at 6774.728 kb on - strand, within AO356_29135 at 6774.755 kb on - strand, within AO356_29135 at 6774.802 kb on + strand, within AO356_29135 at 6774.803 kb on - strand, within AO356_29135 at 6774.881 kb on - strand at 6774.881 kb on - strand at 6774.881 kb on - strand at 6774.892 kb on + strand at 6774.893 kb on - strand at 6776.068 kb on + strand, within AO356_29140
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml remove 6,771,755 - AO356_29130 0.42 +0.3 6,771,812 - AO356_29130 0.47 -1.1 6,771,932 - AO356_29130 0.57 -0.1 6,772,057 + AO356_29130 0.68 +0.9 6,772,057 + AO356_29130 0.68 +0.9 6,772,058 - AO356_29130 0.68 +0.7 6,772,060 + AO356_29130 0.68 -0.4 6,772,183 + AO356_29130 0.78 +0.0 6,772,341 - -0.8 6,772,538 + -0.3 6,772,589 + +0.1 6,772,965 - AO356_29135 0.16 -0.1 6,772,990 + AO356_29135 0.17 +0.7 6,772,990 + AO356_29135 0.17 +0.2 6,772,990 + AO356_29135 0.17 -0.3 6,772,991 - AO356_29135 0.17 -0.9 6,773,179 + AO356_29135 0.24 +0.6 6,773,362 + AO356_29135 0.31 +0.1 6,773,455 + AO356_29135 0.35 +0.5 6,773,683 + AO356_29135 0.44 +0.4 6,773,684 - AO356_29135 0.44 +0.3 6,773,921 - AO356_29135 0.53 +0.6 6,774,306 + AO356_29135 0.68 +0.0 6,774,325 + AO356_29135 0.69 -2.0 6,774,452 - AO356_29135 0.74 +0.0 6,774,534 + AO356_29135 0.77 -0.3 6,774,534 + AO356_29135 0.77 +0.7 6,774,640 + AO356_29135 0.82 +0.5 6,774,727 + AO356_29135 0.85 +0.0 6,774,727 + AO356_29135 0.85 +0.3 6,774,728 - AO356_29135 0.85 +0.5 6,774,728 - AO356_29135 0.85 -0.7 6,774,755 - AO356_29135 0.86 +0.6 6,774,802 + AO356_29135 0.88 -1.0 6,774,803 - AO356_29135 0.88 -0.1 6,774,881 - +0.0 6,774,881 - +0.9 6,774,881 - +0.5 6,774,892 + +0.9 6,774,893 - +0.1 6,776,068 + AO356_29140 0.87 +0.6
Or see this region's nucleotide sequence