Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21790

Experiment: Doxycycline hyclate 0.0001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_21780 and AO356_21785 are separated by 128 nucleotidesAO356_21785 and AO356_21790 overlap by 1 nucleotidesAO356_21790 and AO356_21795 overlap by 4 nucleotidesAO356_21795 and AO356_21800 overlap by 4 nucleotides AO356_21780: AO356_21780 - nitrate ABC transporter substrate-binding protein, at 4,875,231 to 4,876,637 _21780 AO356_21785: AO356_21785 - ABC transporter permease, at 4,876,766 to 4,877,548 _21785 AO356_21790: AO356_21790 - sulfonate ABC transporter ATP-binding protein, at 4,877,548 to 4,878,396 _21790 AO356_21795: AO356_21795 - PBS lyase, at 4,878,393 to 4,879,355 _21795 AO356_21800: AO356_21800 - hypothetical protein, at 4,879,352 to 4,879,639 _21800 Position (kb) 4877 4878 4879Strain fitness (log2 ratio) -2 -1 0 1at 4877.199 kb on + strand, within AO356_21785at 4877.199 kb on + strand, within AO356_21785at 4877.199 kb on + strand, within AO356_21785at 4877.200 kb on - strand, within AO356_21785at 4877.399 kb on + strand, within AO356_21785at 4877.399 kb on + strand, within AO356_21785at 4877.399 kb on + strand, within AO356_21785at 4877.399 kb on + strand, within AO356_21785at 4877.400 kb on - strand, within AO356_21785at 4877.400 kb on - strand, within AO356_21785at 4877.415 kb on - strand, within AO356_21785at 4877.430 kb on - strand, within AO356_21785at 4878.084 kb on + strand, within AO356_21790at 4878.085 kb on - strand, within AO356_21790at 4878.085 kb on - strand, within AO356_21790at 4878.404 kb on - strandat 4878.935 kb on + strand, within AO356_21795at 4879.120 kb on - strand, within AO356_21795at 4879.327 kb on + strandat 4879.328 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
remove
4,877,199 + AO356_21785 0.55 +0.3
4,877,199 + AO356_21785 0.55 +1.1
4,877,199 + AO356_21785 0.55 -1.8
4,877,200 - AO356_21785 0.55 -0.1
4,877,399 + AO356_21785 0.81 -1.2
4,877,399 + AO356_21785 0.81 -1.1
4,877,399 + AO356_21785 0.81 +1.3
4,877,399 + AO356_21785 0.81 -0.5
4,877,400 - AO356_21785 0.81 +0.2
4,877,400 - AO356_21785 0.81 -1.0
4,877,415 - AO356_21785 0.83 -0.6
4,877,430 - AO356_21785 0.85 -0.6
4,878,084 + AO356_21790 0.63 -0.6
4,878,085 - AO356_21790 0.63 +0.3
4,878,085 - AO356_21790 0.63 -0.7
4,878,404 - +0.1
4,878,935 + AO356_21795 0.56 -1.0
4,879,120 - AO356_21795 0.75 -1.0
4,879,327 + +0.3
4,879,328 - -0.4

Or see this region's nucleotide sequence