Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19005

Experiment: Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19000 and AO356_19005 are separated by 81 nucleotidesAO356_19005 and AO356_19010 are separated by 89 nucleotidesAO356_19010 and AO356_19015 overlap by 8 nucleotides AO356_19000: AO356_19000 - tRNA 2-thiocytidine biosynthesis protein TtcA, at 4,271,976 to 4,272,800 _19000 AO356_19005: AO356_19005 - 3-methyladenine DNA glycosylase, at 4,272,882 to 4,273,556 _19005 AO356_19010: AO356_19010 - hypothetical protein, at 4,273,646 to 4,274,071 _19010 AO356_19015: AO356_19015 - NAD(P)H-quinone oxidoreductase, at 4,274,064 to 4,274,669 _19015 Position (kb) 4272 4273 4274Strain fitness (log2 ratio) -1 0 1 2at 4271.936 kb on - strandat 4271.987 kb on + strandat 4271.987 kb on + strandat 4271.987 kb on + strandat 4271.987 kb on + strandat 4272.111 kb on + strand, within AO356_19000at 4272.111 kb on + strand, within AO356_19000at 4272.112 kb on - strand, within AO356_19000at 4272.112 kb on - strand, within AO356_19000at 4272.112 kb on - strand, within AO356_19000at 4272.112 kb on - strand, within AO356_19000at 4272.112 kb on - strand, within AO356_19000at 4272.228 kb on + strand, within AO356_19000at 4272.253 kb on - strand, within AO356_19000at 4272.253 kb on - strand, within AO356_19000at 4272.276 kb on + strand, within AO356_19000at 4272.276 kb on + strand, within AO356_19000at 4272.276 kb on + strand, within AO356_19000at 4272.276 kb on + strand, within AO356_19000at 4272.276 kb on + strand, within AO356_19000at 4272.277 kb on - strand, within AO356_19000at 4272.277 kb on - strand, within AO356_19000at 4272.277 kb on - strand, within AO356_19000at 4272.277 kb on - strand, within AO356_19000at 4272.277 kb on - strand, within AO356_19000at 4272.354 kb on + strand, within AO356_19000at 4272.354 kb on + strand, within AO356_19000at 4272.355 kb on - strand, within AO356_19000at 4272.355 kb on - strand, within AO356_19000at 4272.444 kb on + strand, within AO356_19000at 4272.445 kb on - strand, within AO356_19000at 4272.445 kb on - strand, within AO356_19000at 4272.505 kb on + strand, within AO356_19000at 4272.550 kb on - strand, within AO356_19000at 4272.817 kb on - strandat 4272.835 kb on + strandat 4272.835 kb on + strandat 4272.836 kb on - strandat 4272.836 kb on - strandat 4272.837 kb on + strandat 4272.837 kb on + strandat 4272.837 kb on + strandat 4272.838 kb on - strandat 4272.891 kb on + strandat 4272.891 kb on + strandat 4272.891 kb on + strandat 4272.892 kb on - strandat 4272.892 kb on - strandat 4272.909 kb on + strandat 4272.909 kb on + strandat 4272.909 kb on + strandat 4272.909 kb on + strandat 4272.909 kb on + strandat 4272.909 kb on + strandat 4272.910 kb on - strandat 4273.006 kb on - strand, within AO356_19005at 4273.302 kb on + strand, within AO356_19005at 4273.302 kb on + strand, within AO356_19005at 4273.302 kb on + strand, within AO356_19005at 4273.303 kb on - strand, within AO356_19005at 4273.389 kb on + strand, within AO356_19005at 4273.389 kb on + strand, within AO356_19005at 4273.389 kb on + strand, within AO356_19005at 4273.389 kb on + strand, within AO356_19005at 4273.389 kb on + strand, within AO356_19005at 4273.389 kb on + strand, within AO356_19005at 4273.390 kb on - strand, within AO356_19005at 4273.390 kb on - strand, within AO356_19005at 4273.390 kb on - strand, within AO356_19005at 4273.522 kb on + strandat 4273.539 kb on + strandat 4273.539 kb on + strandat 4273.539 kb on + strandat 4273.540 kb on - strandat 4273.540 kb on - strandat 4273.540 kb on - strandat 4273.541 kb on + strandat 4273.542 kb on - strandat 4273.660 kb on + strandat 4273.660 kb on + strandat 4273.660 kb on + strandat 4273.660 kb on + strandat 4273.660 kb on + strandat 4273.661 kb on - strandat 4273.661 kb on - strandat 4273.661 kb on - strandat 4273.661 kb on - strandat 4273.661 kb on - strandat 4273.661 kb on - strandat 4273.661 kb on - strandat 4273.710 kb on + strand, within AO356_19010at 4273.710 kb on + strand, within AO356_19010at 4273.710 kb on + strand, within AO356_19010at 4273.710 kb on + strand, within AO356_19010at 4273.710 kb on + strand, within AO356_19010at 4273.711 kb on - strand, within AO356_19010at 4273.711 kb on - strand, within AO356_19010at 4273.711 kb on - strand, within AO356_19010at 4273.786 kb on - strand, within AO356_19010at 4273.786 kb on - strand, within AO356_19010at 4273.812 kb on + strand, within AO356_19010at 4273.812 kb on + strand, within AO356_19010at 4273.812 kb on + strand, within AO356_19010at 4273.813 kb on - strand, within AO356_19010at 4273.880 kb on + strand, within AO356_19010at 4273.881 kb on - strand, within AO356_19010at 4273.881 kb on - strand, within AO356_19010at 4273.953 kb on + strand, within AO356_19010at 4273.953 kb on + strand, within AO356_19010at 4273.954 kb on - strand, within AO356_19010at 4273.954 kb on - strand, within AO356_19010at 4273.954 kb on - strand, within AO356_19010at 4273.954 kb on - strand, within AO356_19010at 4273.956 kb on + strand, within AO356_19010at 4273.957 kb on - strand, within AO356_19010at 4273.957 kb on - strand, within AO356_19010at 4273.957 kb on - strand, within AO356_19010at 4273.957 kb on - strand, within AO356_19010at 4274.018 kb on + strand, within AO356_19010at 4274.159 kb on + strand, within AO356_19015at 4274.237 kb on - strand, within AO356_19015at 4274.401 kb on + strand, within AO356_19015at 4274.401 kb on + strand, within AO356_19015at 4274.401 kb on + strand, within AO356_19015at 4274.402 kb on - strand, within AO356_19015at 4274.402 kb on - strand, within AO356_19015at 4274.488 kb on + strand, within AO356_19015at 4274.489 kb on - strand, within AO356_19015at 4274.489 kb on - strand, within AO356_19015at 4274.556 kb on - strand, within AO356_19015

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml
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4,271,936 - +1.6
4,271,987 + -0.3
4,271,987 + -0.4
4,271,987 + +1.8
4,271,987 + +0.7
4,272,111 + AO356_19000 0.16 +1.2
4,272,111 + AO356_19000 0.16 -0.3
4,272,112 - AO356_19000 0.16 +0.2
4,272,112 - AO356_19000 0.16 +0.5
4,272,112 - AO356_19000 0.16 +0.4
4,272,112 - AO356_19000 0.16 +0.7
4,272,112 - AO356_19000 0.16 +0.6
4,272,228 + AO356_19000 0.31 +0.3
4,272,253 - AO356_19000 0.34 +1.6
4,272,253 - AO356_19000 0.34 +0.8
4,272,276 + AO356_19000 0.36 +1.0
4,272,276 + AO356_19000 0.36 +0.6
4,272,276 + AO356_19000 0.36 +1.2
4,272,276 + AO356_19000 0.36 +0.2
4,272,276 + AO356_19000 0.36 +0.8
4,272,277 - AO356_19000 0.36 +0.7
4,272,277 - AO356_19000 0.36 +1.9
4,272,277 - AO356_19000 0.36 +1.3
4,272,277 - AO356_19000 0.36 +0.0
4,272,277 - AO356_19000 0.36 +1.4
4,272,354 + AO356_19000 0.46 +0.0
4,272,354 + AO356_19000 0.46 -0.8
4,272,355 - AO356_19000 0.46 +0.6
4,272,355 - AO356_19000 0.46 +1.0
4,272,444 + AO356_19000 0.57 +1.1
4,272,445 - AO356_19000 0.57 +0.5
4,272,445 - AO356_19000 0.57 +0.2
4,272,505 + AO356_19000 0.64 +0.2
4,272,550 - AO356_19000 0.70 +1.1
4,272,817 - -0.4
4,272,835 + -0.4
4,272,835 + -0.0
4,272,836 - +0.4
4,272,836 - -0.2
4,272,837 + +0.9
4,272,837 + -1.0
4,272,837 + -1.3
4,272,838 - -0.5
4,272,891 + -0.1
4,272,891 + -1.0
4,272,891 + -0.2
4,272,892 - -0.5
4,272,892 - +0.2
4,272,909 + +0.3
4,272,909 + +0.4
4,272,909 + +1.3
4,272,909 + +0.1
4,272,909 + -1.7
4,272,909 + +0.1
4,272,910 - +0.0
4,273,006 - AO356_19005 0.18 -0.3
4,273,302 + AO356_19005 0.62 +0.7
4,273,302 + AO356_19005 0.62 +0.8
4,273,302 + AO356_19005 0.62 +0.3
4,273,303 - AO356_19005 0.62 +0.7
4,273,389 + AO356_19005 0.75 -0.1
4,273,389 + AO356_19005 0.75 -1.0
4,273,389 + AO356_19005 0.75 -0.1
4,273,389 + AO356_19005 0.75 +1.6
4,273,389 + AO356_19005 0.75 -0.6
4,273,389 + AO356_19005 0.75 -0.2
4,273,390 - AO356_19005 0.75 -0.2
4,273,390 - AO356_19005 0.75 -0.0
4,273,390 - AO356_19005 0.75 +0.5
4,273,522 + -0.2
4,273,539 + +0.2
4,273,539 + +0.2
4,273,539 + +0.9
4,273,540 - +0.2
4,273,540 - +1.3
4,273,540 - +0.9
4,273,541 + +0.4
4,273,542 - -0.3
4,273,660 + -0.2
4,273,660 + +0.1
4,273,660 + +0.7
4,273,660 + +0.6
4,273,660 + -0.3
4,273,661 - +0.0
4,273,661 - +0.7
4,273,661 - -1.4
4,273,661 - +0.5
4,273,661 - -0.4
4,273,661 - +0.4
4,273,661 - +0.0
4,273,710 + AO356_19010 0.15 -0.9
4,273,710 + AO356_19010 0.15 +0.5
4,273,710 + AO356_19010 0.15 +1.1
4,273,710 + AO356_19010 0.15 +0.4
4,273,710 + AO356_19010 0.15 -0.4
4,273,711 - AO356_19010 0.15 +1.3
4,273,711 - AO356_19010 0.15 +0.1
4,273,711 - AO356_19010 0.15 -1.1
4,273,786 - AO356_19010 0.33 -0.3
4,273,786 - AO356_19010 0.33 +0.5
4,273,812 + AO356_19010 0.39 +0.6
4,273,812 + AO356_19010 0.39 +0.6
4,273,812 + AO356_19010 0.39 +0.6
4,273,813 - AO356_19010 0.39 +0.4
4,273,880 + AO356_19010 0.55 +1.0
4,273,881 - AO356_19010 0.55 +0.8
4,273,881 - AO356_19010 0.55 +0.3
4,273,953 + AO356_19010 0.72 -0.2
4,273,953 + AO356_19010 0.72 -0.1
4,273,954 - AO356_19010 0.72 +1.0
4,273,954 - AO356_19010 0.72 -0.2
4,273,954 - AO356_19010 0.72 -0.2
4,273,954 - AO356_19010 0.72 +1.0
4,273,956 + AO356_19010 0.73 -0.0
4,273,957 - AO356_19010 0.73 +1.5
4,273,957 - AO356_19010 0.73 +0.5
4,273,957 - AO356_19010 0.73 -0.7
4,273,957 - AO356_19010 0.73 +0.1
4,274,018 + AO356_19010 0.87 +0.5
4,274,159 + AO356_19015 0.16 +0.8
4,274,237 - AO356_19015 0.29 -0.1
4,274,401 + AO356_19015 0.56 +0.4
4,274,401 + AO356_19015 0.56 +0.6
4,274,401 + AO356_19015 0.56 +0.9
4,274,402 - AO356_19015 0.56 -0.2
4,274,402 - AO356_19015 0.56 -0.0
4,274,488 + AO356_19015 0.70 -0.7
4,274,489 - AO356_19015 0.70 +1.0
4,274,489 - AO356_19015 0.70 -0.1
4,274,556 - AO356_19015 0.81 +0.3

Or see this region's nucleotide sequence