Experiment: Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_10045 and AO356_10050 overlap by 4 nucleotides AO356_10050 and AO356_10055 overlap by 4 nucleotides AO356_10055 and AO356_10060 are separated by 68 nucleotides
AO356_10045: AO356_10045 - glucose-1-phosphate thymidylyltransferase, at 2,267,509 to 2,268,384
_10045
AO356_10050: AO356_10050 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 2,268,381 to 2,268,926
_10050
AO356_10055: AO356_10055 - dTDP-4-dehydrorhamnose reductase, at 2,268,923 to 2,269,807
_10055
AO356_10060: AO356_10060 - ATPase, at 2,269,876 to 2,271,684
_10060
Position (kb)
2268
2269
2270 Strain fitness (log2 ratio)
-2
-1
0
1 at 2269.813 kb on + strand at 2269.813 kb on + strand at 2269.819 kb on + strand at 2269.820 kb on - strand at 2269.820 kb on - strand at 2269.820 kb on - strand at 2269.837 kb on + strand at 2269.837 kb on + strand at 2269.837 kb on + strand at 2269.837 kb on + strand at 2269.837 kb on + strand at 2269.837 kb on + strand at 2269.838 kb on - strand at 2269.838 kb on - strand at 2269.838 kb on - strand at 2269.838 kb on - strand at 2269.838 kb on - strand at 2269.843 kb on + strand at 2269.843 kb on + strand at 2269.843 kb on + strand at 2269.843 kb on + strand at 2269.844 kb on - strand at 2269.846 kb on + strand at 2269.846 kb on + strand at 2269.846 kb on + strand at 2269.846 kb on + strand at 2269.846 kb on + strand at 2269.846 kb on + strand at 2269.847 kb on - strand at 2269.847 kb on - strand at 2269.847 kb on - strand at 2269.847 kb on - strand at 2269.847 kb on - strand at 2269.847 kb on - strand at 2269.847 kb on - strand at 2269.847 kb on - strand at 2269.847 kb on - strand at 2269.847 kb on - strand at 2269.978 kb on + strand at 2269.979 kb on - strand at 2270.026 kb on + strand at 2270.026 kb on + strand at 2270.026 kb on + strand at 2270.026 kb on + strand at 2270.026 kb on + strand at 2270.026 kb on + strand at 2270.027 kb on - strand at 2270.027 kb on - strand at 2270.027 kb on - strand at 2270.027 kb on - strand at 2270.060 kb on - strand, within AO356_10060 at 2270.060 kb on - strand, within AO356_10060 at 2270.060 kb on - strand, within AO356_10060 at 2270.060 kb on - strand, within AO356_10060 at 2270.197 kb on + strand, within AO356_10060 at 2270.197 kb on + strand, within AO356_10060 at 2270.197 kb on + strand, within AO356_10060 at 2270.197 kb on + strand, within AO356_10060 at 2270.197 kb on + strand, within AO356_10060 at 2270.197 kb on + strand, within AO356_10060 at 2270.198 kb on - strand, within AO356_10060 at 2270.198 kb on - strand, within AO356_10060 at 2270.287 kb on + strand, within AO356_10060 at 2270.288 kb on - strand, within AO356_10060 at 2270.359 kb on + strand, within AO356_10060 at 2270.359 kb on + strand, within AO356_10060 at 2270.359 kb on + strand, within AO356_10060 at 2270.360 kb on - strand, within AO356_10060 at 2270.360 kb on - strand, within AO356_10060 at 2270.360 kb on - strand, within AO356_10060 at 2270.576 kb on + strand, within AO356_10060 at 2270.585 kb on - strand, within AO356_10060 at 2270.794 kb on + strand, within AO356_10060 at 2270.794 kb on + strand, within AO356_10060 at 2270.795 kb on - strand, within AO356_10060
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0001 mg/ml remove 2,269,813 + +0.4 2,269,813 + +0.0 2,269,819 + -0.3 2,269,820 - -0.0 2,269,820 - +0.9 2,269,820 - -1.0 2,269,837 + +0.5 2,269,837 + -0.2 2,269,837 + -0.4 2,269,837 + -0.8 2,269,837 + +0.4 2,269,837 + +0.6 2,269,838 - +0.3 2,269,838 - -0.4 2,269,838 - +0.2 2,269,838 - +0.7 2,269,838 - +0.4 2,269,843 + +1.2 2,269,843 + -0.7 2,269,843 + +0.1 2,269,843 + -0.1 2,269,844 - -1.1 2,269,846 + -0.6 2,269,846 + -0.2 2,269,846 + +0.7 2,269,846 + +0.8 2,269,846 + +0.4 2,269,846 + -0.2 2,269,847 - +0.1 2,269,847 - +0.2 2,269,847 - +0.2 2,269,847 - -0.1 2,269,847 - +0.4 2,269,847 - -1.1 2,269,847 - -0.5 2,269,847 - +0.4 2,269,847 - +0.2 2,269,847 - -0.2 2,269,978 + +1.1 2,269,979 - -0.2 2,270,026 + -0.4 2,270,026 + +0.5 2,270,026 + +0.9 2,270,026 + +1.7 2,270,026 + +0.7 2,270,026 + +0.3 2,270,027 - -2.3 2,270,027 - +0.3 2,270,027 - -1.0 2,270,027 - +0.2 2,270,060 - AO356_10060 0.10 +0.2 2,270,060 - AO356_10060 0.10 +0.4 2,270,060 - AO356_10060 0.10 +0.3 2,270,060 - AO356_10060 0.10 -1.6 2,270,197 + AO356_10060 0.18 -0.9 2,270,197 + AO356_10060 0.18 -0.0 2,270,197 + AO356_10060 0.18 +0.9 2,270,197 + AO356_10060 0.18 -1.4 2,270,197 + AO356_10060 0.18 +0.5 2,270,197 + AO356_10060 0.18 -0.5 2,270,198 - AO356_10060 0.18 +0.3 2,270,198 - AO356_10060 0.18 +0.1 2,270,287 + AO356_10060 0.23 -1.2 2,270,288 - AO356_10060 0.23 -1.2 2,270,359 + AO356_10060 0.27 +0.7 2,270,359 + AO356_10060 0.27 +0.1 2,270,359 + AO356_10060 0.27 -0.4 2,270,360 - AO356_10060 0.27 +0.1 2,270,360 - AO356_10060 0.27 -0.0 2,270,360 - AO356_10060 0.27 -1.3 2,270,576 + AO356_10060 0.39 -0.4 2,270,585 - AO356_10060 0.39 -2.0 2,270,794 + AO356_10060 0.51 +0.2 2,270,794 + AO356_10060 0.51 +0.8 2,270,795 - AO356_10060 0.51 -0.3
Or see this region's nucleotide sequence